Array 1 2805-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUXW01000217.1 Serratia marcescens strain 666_SMAR 664_3107_48968, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2804 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 2744 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 2684 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 2624 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 2564 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 2504 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 2444 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 2384 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 2324 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 2264 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 2204 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 2144 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 2084 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 2024 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 1964 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 1904 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 1844 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 1784 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 1724 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 1664 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 1604 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 1544 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 1484 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 1423 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 1363 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 1303 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 1243 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 1183 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 1123 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 1064 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 1004 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 944 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 884 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 824 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 764 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 704 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 644 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 584 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 524 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 464 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 404 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 344 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 284 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 224 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 164 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 104 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 44 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAAC # Right flank : AACAAAACCTATTTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16-346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUXW01000122.1 Serratia marcescens strain 666_SMAR 410_10038_155904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 76 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 136 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 196 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 256 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 316 28 96.4 0 ....................A....... | A,A,G [336,339,342] ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGACGCTGCGCGAAG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8828-9934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUXW01000122.1 Serratia marcescens strain 666_SMAR 410_10038_155904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8828 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 8888 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 8948 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 9008 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 9068 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 9128 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 9188 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 9248 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 9308 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 9368 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 9428 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 9488 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 9548 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 9608 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 9668 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 9728 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 9788 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 9848 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 9908 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //