Array 1 350-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVW01000023.1 Paenibacillus dendritiformis strain PV3-16 PV3-16_S3_L001_R1_001__paired__contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 349 32 100.0 34 ................................ AATGGTAATGCCACCTTTACGCGGCATCACTACT 283 32 100.0 36 ................................ TTCTACTACACTAAAGAATATACATATACAGGATTT 215 32 100.0 35 ................................ CTCCCTCGTATTGGGTAATGTCAAGCGTATTGATA 148 32 100.0 33 ................................ CCTAAACATTCGCGGCATCCTCCGCTGATCCCC 83 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TAGTTGAGAGGGAGCTGGATGGGGGAGTTGTGATGACCTCGTTCGAGCGGTTGGAACCTTTGGATAGAGGTCATTTGCCGCTCCTGGCGGGATGGGGAAGTGCGGGAACGAGTGTGGTAACGAATGGACGGGATATTTCGGTTGGTAATGGTTCGGTAACACGTTGAGCAATGACCCTGTAGGATGCGCATTAATGCACGAAGTGATGAATTGTTGTATATACGGACTCGAAAGGCACTATATTATGAAACTGCAAAATGTGGTAACTTATATATATTAGATTTAACGATAGAGAAGCCCCCCAAGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAAAATTTCTATATTATAGGAAAAATCCAGTTTGTGGTTTGCGGCAAAGGTGAGAAACGACCTGCTTTAGATTGATTCTATAGCTAATTTGATTTGTTTAATCATAACAAGAACGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TATCAGTTCGCCTTATAGTACCGAGGCAGCCGCAAGTCGCATCCTACGCGGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 50929-51228 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVW01000041.1 Paenibacillus dendritiformis strain PV3-16 PV3-16_S3_L001_R1_001__paired__contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 50929 32 100.0 34 ................................ TCGTTCAGACAGCCACTCTTTGAGTGTATTCCGA 50995 32 100.0 36 ................................ CGTCTAAGTGCTCAATCATATATGGGCAACTGGAAC 51063 32 100.0 34 ................................ GATGAGTACATTGCCTCGTTAATCAATGCGCGGT 51129 32 100.0 36 ................................ CGTCCAGCCAGCGGTGACACTCCGTGCATAGATGCA 51197 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : TCCGGCCTTTTGCGGCATTTTTGCTTCCATGCTTTAACGTGGGGTCGCATTAGTGCTGGATAATTTTATAAGGCTTTGGCTAACCATAGCAGGCATACGCCAGGATATCCGACCGAATGCACTCTTTCTCTTTATTGATATGAGATACTGCATGTTCTAACTTCACCCATCACGACGAGCGGCTGAGCCGCTGCCTGATCGATTCTATCGGGAGATGCGCATAGCCAGGCTACACAAAAGTATGTTCTTAGCACATTTGTCCGTGATATACTAAGAAGTATGGTGTCGGAGCATGCCAAATTTGGCCGAGACATTCGCACGGCCACTTCGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCAGGTTTATTGAAATATTATCCAATAAAGTTGATTTATTTTGGTTTGTTGAAGCTAACTGATTTGTTTTCTTGAAGTTTTTAACCAAGAAAACGATTGTTTTTGTATGTTTTGTGCTATTTTTCGCT # Right flank : ATTACCCAGGATATCCGCATGATAGATAGGCAAAGTCGCATCCTATGTGGATG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3182-2422 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVW01000059.1 Paenibacillus dendritiformis strain PV3-16 PV3-16_S3_L001_R1_001__paired__contig_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3181 32 100.0 33 ................................ TCGAAATCTCCGGCTTCGGAGTCGATATCGAAG 3116 32 100.0 34 ................................ TACTTTGCTGGCCGGCTCATATATTTCCTTGACC 3050 32 100.0 34 ................................ ATCACTCCCGAGCATTATTTCCATTTCTCCCATC 2984 32 100.0 36 ................................ TGATATTATTATAACACGCATTAATAATACGCGTCA 2916 32 100.0 33 ................................ TTTAAAAATATGTAATTAAGCACCTTCGCGGTG 2851 32 100.0 36 ................................ GACGAGATGACGCTGAACTTGGTGAACTCCATGCGC 2783 32 100.0 35 ................................ TCTCCTACCAAAATATCAGGTGTCGTTTTTTACTA 2716 32 96.9 33 ............A................... CCAAAAGGGAAGCCGGCACAATTCGCCTTCGGT 2651 32 96.9 36 ............A................... GGCAAATTCGATGTCAGACATATCCTTATAATAATC 2583 32 96.9 33 ............A................... GCTCACCAGCGATGACCGCGCACTTTCCAGTGC 2518 32 96.9 33 ............A................... CACTCCAGTCGAAGTGTCGCCGAAGACGATCAA 2453 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.0 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CATTCATCTGGCTTACCGTTGAGTCGAATGGCAGCCCCCATGAGCCGATTCCTCGTCAGAGCCAGCGGCACTGACATATTGCCCGAACAAGCCCCGTGTCGCTTGGCCCCGGGCCAACAACCGGGGCTTCCCCTCACGTTAGCAACACGCCCTCAAGGGACTTCCCGTGAACGCAACGGCCATTACCTTATCACGTTGGCCCATGATATACTGAATGAGAGAACAAGTTCAAAGAATTCAACAGAACGAGTGGGAGATTCAGCCCTTTGCCCCGTCGAGGAGACCGGAGTTGTACAAATTGATGATAGGGTGCAACTGCTGGTGCGAATGTATAGTGCACATGAAATCCCCGGGACATTCGCACCATGATTATTACATAATTATCCAAATGTATTGAAGAATAGCTATAGTATTAATGTGAATTTGGTTGCTATTTTCATTTTCTGAATAATTCAATCATATTTTAAATGGATATTTGACACATTCAGTCAATTTTCGCT # Right flank : TCTGAGTCGTAAAGTTGAGCAATATATATCGTTGGTATCGTAGCATGTTATCTGTTTTTATGTGAGGATGCTTCGCTTTTAAGCTCCCTCTATCTTATTTACATCAATTCAATATTATGGTAGTGTCAAAATAAAGATGTCTTGGAAGGGTGATGATATGGAAGCGTCGTCGCTACAATATTCCACTATTGGCGACAGCATAAGACAATACAGAAATAAAGCCAATCTTACACAAAGCCAACTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCCAAAATTGAAAATGATGAGGTAGAACGTCCTTCATTTGAAAAGGTTAATCCCATAGCTAACGCATTACATATACCTATTCGTGAAGTCATACAACCATATCTTGAAATAGGGCAAAAATCCGATGTTCTGTTCGGAATCTTACGAGAAGTAATTAAGGGAGATGGAGCGGATTTAATCGATTTAATTATTAAAACGGCATCTGCCTGTTTACATAGCAAGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCTACACGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 91485-90919 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVW01000008.1 Paenibacillus dendritiformis strain PV3-16 PV3-16_S3_L001_R1_001__paired__contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 91484 32 100.0 34 ................................ TTGAGTACCCGCCGCGAGTAGATGTAAATACGAA 91418 32 100.0 36 ................................ ATTCCAGTTGGCAGAGTTGCCGCTTGAGTTGAAGAC 91350 32 100.0 35 ................................ AATGAGTTTCAATCGTGGCTCCGAACAAAGACGGC 91283 32 100.0 34 ................................ GCCGATGTAGCAGAGGCCCCAAGGGTCTGAATCG 91217 32 100.0 37 ................................ CCATATTGCCGGACGAGCAAAAGCACGTCCAACGCCC 91148 32 100.0 34 ................................ ATCTTTTACTAAGACCAACGCCAAGGACTCGCTC 91082 32 100.0 33 ................................ ATCTGCGTTTGAATTGTCGCGAGCTAACGCTAA 91017 32 100.0 35 ................................ GCGGATACGTAGTAGTTGTATGCGGTGCGGGCGGC 90950 32 87.5 0 A...........A.......A...G....... | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 98.6 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TCTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGCAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAATTCGCCAGCTTGAAGATCCAACTTATCGATATGATTGACGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAGCAAGGTGGAGCATATTGGCGTGAAGGCATCGATCGATATGGAAGGGACCCTAATTTTCTAGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGACTCGCACCATGTTTTTTCTATATTATGGGCAAGTTTCATTTTTTAGGTTGTTGTGAGAGAGGGAAATAAGCTGCTTTTAGAGCTATGGAGTGGATATTTTGATTGATTCCGTCATATCAAGAGTGAAATGTGATTATTGCAATCATTTTTCGCT # Right flank : GCTAACAGTCTGAATACATTCTTGGAGTCGATGACCGACGTATCCGAGGCATTGTTTGATTTGTAATGGTAAAATAGATAAAGAAATTTATTCTTTCCCTCTCCTTAAAATCAAAAAGACGTCACGATGCTTGCTAAGTATATTGCGGGTTCTGGTACATAAACATCTTTTTGACGGTTAGACATTGAAGTAGTCGGGTAAGATGCTTAAAGTTATTAAAAAGGTTACAAAGATATAGTTAAGAAAACAATAGAAGCTATACTTCAGGTCAGTTAGGACTTGAGGAATAGCTTCTATTTTTTATAGCCTTTATATTAATATTTCAATCCGCGCCTTTTGGCGACAAAAACACTATAGCATTCATTGTAAGAGAAAGTGTGTATTAAAATCAACAGTTTCAAAATTTCAGAACTTCTGATATTTACAAATAACCCCATCTTTCGTATGATGTTATTAATTAATGGCTCATTAAAATAAAAGCTATATTACATGAATCCAAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 103421-103256 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVW01000008.1 Paenibacillus dendritiformis strain PV3-16 PV3-16_S3_L001_R1_001__paired__contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 103420 32 100.0 35 ................................ GTCCAAATTATTGAACCATCCCAGCTCAGCGTATT 103353 32 100.0 34 ................................ AGGAAGCCTTTCAGGAATATGCGGAACGTCGCCC 103287 32 87.5 0 ...........................AT.TG | ========== ====== ====== ====== ================================ =================================== ================== 3 32 95.8 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GGATGCGTGGATTGAAATCAAAGAGTCCTCTCCGGTCGCTTGAGCCGATCTA # Right flank : ATGGACTTCGTTAGGGTAGGGGAGATGGATTCGGTCGCATCCTATTCGGACGTGGAAAAAATTAAGAAACCAAAGCAAAAAAGCATCTACCCCCGTGTCAAAAGATGACGCGGGGGCAGGATGCTTGTCTTTTTTTATAGAACATATGTTCCCTGACAGGCTGTTGTCACTTTCTTTACCCATAATAGAATTTATAGTATTAGTACGAAGGAAGGCGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTCTCTGCATTGAAGCGGACTGCGCTGGCTAGCATCCCGATCATCGTTTATTTGATGTGGCTTCCCCAATGGAAGTGGATCTTATATGTTGTTGCGGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTCCTGACAACGGATGAGA # Questionable array : NO Score: 8.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33165-33928 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVW01000014.1 Paenibacillus dendritiformis strain PV3-16 PV3-16_S3_L001_R1_001__paired__contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33165 32 100.0 34 ................................ CTCACTGTACTTTCCGGCCTGATTGATGTCCTCG 33231 32 100.0 34 ................................ ATCTGCAGCGGCGACTTTCCGTGTTGGGGTCATC 33297 32 100.0 35 ................................ CGCATGGGTACCTCCCAGCAAAGAAAATACTCGAA 33364 32 100.0 34 ................................ GTTTTAGAAACACTCGATTCGAAGTAATGTCCGC 33430 32 100.0 35 ................................ CACGGTGCCGGATACAAAAACGAAACTCAAGAAGG 33497 32 100.0 33 ................................ GGTATGGCGGCATCCTGGAGGAGGGCTCCAAAC 33562 32 100.0 35 ................................ ACCCTCCTATGGATGTTCTTATGCTCATATTCTAC 33629 32 100.0 33 ................................ TCCATACTTGGCCCGTCATGGGTCGGCGTCATC 33694 32 100.0 36 ................................ AATCGGTCGGCCATCTCATCCAAACGGGCTACAGTG 33762 32 100.0 35 ................................ GCAGATGCACATCGAAGCCTATCCTGCTCTCGTAA 33829 32 96.9 36 .......C........................ GACCAGATGCTTGTCCTGGTAGGCCCGCAGGGGGCC 33897 32 90.6 0 .......C...T...................C | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.0 35 GTCGCATTCTACGCGGATGCGTGGATTGAAAT # Left flank : ACCGTATTTTCGGTCCAGCGTGGAATCACTCCGTTCGATTTGGAGGACATTATGGGATCGTTTCTGGCTTCGTAGGGTACGGCGGTTTTAGCGGCGTTTCGTTGAGTGGGGAACGGAGACAGGTAAGGGCCGTTCTGTTCCTCTCCTTTTTATCATTTACCTCTCATTCTGAAAGTCCAGCTTCCTGATTTGGATGTTGTGTGGCCACATATTTTAAAAATAGTTGCTTGTGATATACTGAAAAAGAGATAAACTCGTGGCATGAGCAAACGAGGAAGTATCAATATATTAATAATAGAATAAGAATGCTGAAAAAACAGGTGCGAATGTGAAGCTCACATGAAATCCCAGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTAAGTTAGTGGAAACTGATTGGTTGAAGCTTATTCCAATCTAATTTGCTCGGTTCCTATGAATTTTAAGTGGAAAACTGATTGAATTGTTATATCTTGTGTTATTTTTCGCT # Right flank : CAGACATATCGGTACCACAACAAAGAGCAGGAAGCATCACGTTTCACTGCTCTTTTTTCTGTCTTAGAATTCGATTTTAAGGCTGTCTCCGTTGACATATACGCCTTCAGAACGGGTAATCGGCAGCTTTTGTTCAGCCGTGAAACCGATCGTTTCGCCATCTCGTAAAGTAACATCCTGCTTAATCCTATCGTCATTTATCGGCCTCCTTGAAAGGGGAGAACAATGATTGTTTCAAAATTCTTATCTCCCGCTATCGTTGTTAAATGACCGCCATATGTTTCAGCCACTTTCTGAATATTTAGCAATCCGACCCCATGAAGATCAGGGTATTTCCGTGAGTTGTTTTTGTTCTGTTCAGAAATTTCCCGGCGAGAGTTGATAACGTGAATGATTAAGGAGTTATTAATGGAATAGATTTTCAAGTGAATCAACCTGTTTTCGTTCCCAGGTATAAGACGGACCGCTTCGATAGCATTGTCCAAGACATTACCAACTAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 2 43280-43775 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKVW01000014.1 Paenibacillus dendritiformis strain PV3-16 PV3-16_S3_L001_R1_001__paired__contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 43280 32 100.0 34 ................................ TTTCAACAGCCTCCAAGTCCGGATCTAACGCCCG 43346 32 100.0 34 ................................ CGATACGATATACGCTGCGACCTCTTCGGCCTCC 43412 32 100.0 35 ................................ TTCTGAATTTGAAAGGGTGTATATCCGAGTATAAT 43479 32 100.0 35 ................................ GCGGAAGTAAAGGTCGAAAATAACGTAACATCATG 43546 32 100.0 34 ................................ TGGCGCGTCCAGGTCGTGCTTTACCGCGCAATTC 43612 32 96.9 34 ...................T............ GTACGGCGCAAGTTGATACGTACCGCCGTCCAAC 43678 32 100.0 34 ................................ CCCATCCGTATAAATTTCAATGGCGGCATTTGAG 43744 32 93.8 0 ....................C..........C | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.8 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CAGGAAGCGATATGACGTATCGTGGCGGTGATGTACCGTGTTGTGTTCATCAGTTTCCGTCCCCATACAAGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGCGGTGGGGAACAGGGTGGGGAATCTAGCCGAGTCTATGCTGTATAGCCATTCGACTAGAATTTCTGACTGGTCGGGATTCATTTTTCGCTAACGCGAATTCTGCATGAGTTAGTCTGAAATTATCCATCATTTAGCTCCCCTTGTGTTATACTGAAAAGGAGTTTAGAGCCTGTTTGAAATGGTGTAAAAAGAAATGAATAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACTAAAATTATTGCAATGTTATCCAATTCAGTTTGTGAAAGTTAATTAGTTTAAAGCTATTTTGAGCTAAATCTCTCATTTGCCTCGAAATTTTAGCCAAAAATTGATTTTATTGATATATTTTATGTAATTTTTCGC # Right flank : GAAACCGGCCTTCGGCCTTGCGGCAAAGTTGAAAACGTTTCCGATGCGGCACAAAAGAAAATTTTCTATGACAAACCCGATTGTGATGAGGCTGTCCAATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATGTACAGATAAGAGAGTGGCAGGAAGACGGCGGACGGCAAAGCGGCGGAATAGGGACGGGTTTAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAAATCCTGCATGAATCAGGCTGTTGAGAAAGTCCAAGGGATTTTTTGGCACTTCATTTTTTATGTGGTGGATCTCGTCTCTCCGTAGAAAAAATCGATTTAAAACGCTATGCGTGCCAAGTTTTGAGTAGGAAAATGGACAATCTCCACCCCTTCGTAAAAAACAGGGGTTTTCCAACGACCTGAAAACTGCACCATTTCCCTAGACACGTCTATCCGGTAGGCA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //