Array 1 587163-587350 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022826.1 Nitrosophilus labii strain HRV44 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 587163 36 100.0 39 .................................... ATAAAATTTAAATATCCATTTTTTTCATCCATCCATTCA 587238 36 100.0 41 .................................... CCTTGTTGCCCAAAACTATCAATACCACATATTTTTACAAT 587315 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 100.0 40 GTTACAACTAAGACCCGATTTGAAGGGGATTGAGAC # Left flank : TCTGATCCAGTCTATCTATAATCGCTATTTAACTATATTGGGTTTGAAGCCTCAAAAGCTCCCTTTTGAGCCAAAAGGAGTAGTTGGAAGTAGCGATATAAAGTTTTTGGAACTTCAAAGATACTCAAATAGACAAAAAACTAAAATGAATCTAGGCGGTATCATAGGCGAAATGGAGATAAAAGAGATCGATAAAGAGAGTTTTGAACTTTTAAAACTAGCTGAAATCATAGGCATTGGAAAGCAGACCGTATTTGGTCTTGGAAAAATTAAAGTGACAGATATGGTCGCTGAAACTAAGTAAAATATAATATAAAAGATAACATAAACACAGTTTTCATTAAAGTTTCATTTAAGCATTAAACAAAACTTAAAGTGTCGATTTTATGGGGAACTATCTTCTTAAGAGAGGCTAAAAATGGGTTATAAAGCAAACTTTAAGAAAACTGCTGTTAAACTAGAATCTCGATTTTATGGGTATTTGAAAGCAAAATGTTGCT # Right flank : CTTTTTTTATTTTTCTTTTCATCTTAAACTCCTACTAATAAAATTGCTAAAATAGCTCAAGAGATAAGCAGGTAAGACCCCATTTTATATAGATCACTGCCCATGGAAGGAGGGCAAATCTCAAAGGAGTTTGTCACCTGCTTACAATCCCAATAGGTTGATTGGGCGCTAAGCCCCTGTCACGATGGAGACAGGATGAAAGCAGGCGCCTGCTTATCTGTTGAGCTTATATTTTTTTCATTTGAAAGGAGGATTGGAATGCGTTGGTTTCTTGGAATCGATATCTCCAAAAGCAGTTTCGATACCACACTGTTAGATGGAAAAAGTGGCAAACTCCATCACGATAGATTCACAATGGACAAAGAGGGGCTCGATGCACTTATGAAGCATCTTACTCCTTTGCCCAAAGACTCTCTGTTTATCGTGATGGAATCAACCGGCATCTACCATCTTCCCTTGCTCGCTTTTTTGCTAGAACAAGGGTTTACATGCAGTGTGAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAAGACCCGATTTGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 588862-589208 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022826.1 Nitrosophilus labii strain HRV44 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 588862 36 97.2 41 ....................T............... TGTCTTTCAAGCCAAAGACATAAATCTTGTACAATATCTAA 588939 36 97.2 43 ....................T............... TAGTTGTTCGAGTTCATCATCATGTGGTATATCGGCGTTTAAT 589018 36 100.0 39 .................................... TAGCAATTTCTTTCATCGACATATCAGATTGGCACATAT 589093 36 100.0 45 .................................... CCCACAATGTATACTTTATCCATTTTTTCTCCTTATTACTTAGAG 589174 35 83.3 0 ........................-.T..GC...GG | ========== ====== ====== ====== ==================================== ============================================= ================== 5 36 95.5 42 GTTACAACTAAGACCCGATTAGAAGGGGATTGAGAC # Left flank : CCATCGAAGAAGCCGTGAAGGAAGAAAGGCTCGATGATGATATCCACACCCTCACTTCCATCCCTGGTATTGGGACTACTACGGCTACAAACTTTGTTGCTGAAATTGGCTCTATCAAGCGTTTCGCTTCAGTCAAACAGCTTTGTGCCTTTATTGGGTTTGACCCAGCCATCCGTCAAAGTGGTAGCTCCATTGATAGCAAAGGACATATCTCCAAAAGGGGACACGCCTCGCTTCGAAGAACCCTTTGGCAGATGGCGATAGGAGTGATTCGATGCCTTCCCAAATACAAAGCCTATTATGAAAAGAAACGTCAAGAAGGCAAAACCTTCAAACAAGCTGTTGTCGCTGTGGGCAACAAATTGCTTCGTCTGCTATTTACGCTGTTAAAGAACAAAATGCCATTTCACGAGGAATTGGCTATGAAAGGTGTAACTGCGTAACACCTCTCTTATCTATTTTTGAAAGGGTTTGTTTATAGTTGACTCCTTTTTTTATTT # Right flank : GTAAAGCGAAGCTTTAGAACGATAACTGCTTATCGTTTGTGCCCGAGCGAAAGCCTTGAGTATATGCGAGTTTGAAAATCTAGGATTTTCGTGATGAGCATACGAAAGGCTGGTGTACCTAGAAGAAAATCGAGCGAGCAAAGCAAGCGAAGATTTTCGGTTATCTCACTTTGAGGGGATTTGGACTCGATGTTATTTTCTTAATCTCTTTAGGCACATTTGCCTTAAGTTTTTATTTATGAAAAATAATGGTCAAAAGTTTTGTCTATTTTTACATTTTTGTTACAATCAAAATATGTTAAAAGTGATAGAAAAAACGTTAGATTTTATATTTACGCAGGTTAGTGTCTTTGTTGTTTCTCTCTTTCTATCTATAGTAGTTATAGTTTTGCTCTATTGTGCCGATATAAACCTTGATAATGTTACGGTAGTGATCGTTGCAATTACGGGGTATGCTTTTTATATATCTACCTCATTTAAAAGTCTGTTTTAAAGAGATC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAACTAAGACCCGATTAGAAGGGGATTGAGAC # Alternate repeat : GTTACAACTAAGACCCGATTTGAAGGGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 1338613-1333903 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022826.1 Nitrosophilus labii strain HRV44 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1338612 30 100.0 36 .............................. ATCCTTGATTATTCGCCTATATTAACAATTGTTGAT 1338546 30 100.0 36 .............................. TCTAACTCTTTCTCTTTCGGCTTTTCTTGCTTCTGC 1338480 30 100.0 36 .............................. AACAAAACAGCGACTGGAACAGCAGTATCGAAAATC 1338414 30 100.0 36 .............................. TCATTCAGGCAAAGATGGAAGAAGCAGGGGTGCAAG 1338348 30 100.0 35 .............................. AGATGTGTTTAGCAAGACAGCACACAGATTTTATC 1338283 30 100.0 36 .............................. CCTCGTCCGTTTTGGCTCTTATGACTATCTTTGCGT 1338217 30 100.0 37 .............................. GTTCGCTGTCGCCTTGCAAACATTCAGACAGCATTCT 1338150 30 100.0 36 .............................. ATGTTTCTATGTAAGTATCGTTTGTAAAATCAACGG 1338084 30 100.0 36 .............................. AACAAGAGGCGTGCCCTGGTTACATAGCGCTATGGT 1338018 30 100.0 36 .............................. TCTTTTGCTCCTGTTTTTTTTCTTGCTTGCCTTTTT 1337952 30 100.0 36 .............................. AGTTTTTTGACTTGCGAAGCTGCTTTATCAGTAACT 1337886 30 100.0 36 .............................. TCCGTCATTTAGATATTTAAATATGCTTGTCTGCAC 1337820 30 100.0 36 .............................. GAGCGATTATAGATGTTACAGCGCTGGTTTTTTTAA 1337754 30 100.0 35 .............................. TTTACATACAAATACATATATCTATAATTATCTCC 1337689 30 100.0 36 .............................. TTGTGATATAGGTTGTGTCTATATCGCCGCCCATTA 1337623 30 100.0 36 .............................. ATGTTTAAGTTTTTCGCCTACAACTTGAACAATTGC 1337557 30 100.0 37 .............................. TCAGCAGAATATCCACTACTATACCAGCTATCCATAA 1337490 30 100.0 36 .............................. TATTCAAACTCGATAGATTCTCTTCTTGCTTTTAGT 1337424 30 100.0 36 .............................. ATGGTATTTTTTCGCTATCTTCTATAAAATATTTGA 1337358 30 100.0 34 .............................. CCGTTTGCACCAGCGCCATTTATAGCAGCTTTGT 1337294 30 100.0 36 .............................. GATCAAGTCCGCCCCACATACCAACAATTAAATCTG 1337228 30 100.0 36 .............................. GGTTTAAACGCAGGCGGTCTTTTGTGTTGTGATTCT 1337162 30 100.0 37 .............................. TTTAACCAAAAACCAGCAACGCCTTTAAATTCTGCTT 1337095 30 100.0 36 .............................. TAGCCAATCCTTTATGTAGTCTTTATAAAGATACTT 1337029 30 100.0 36 .............................. TTCCTACCGAAGCTCCTATAACTTGCGATATAGAAA 1336963 30 100.0 36 .............................. TTTTTTTAGGCGGTTTGACAAACTTTGCCCAGTTCA 1336897 30 100.0 35 .............................. GGGTCTCTTGTTAGTCTAAAAATATGTGTTATTTG 1336832 30 100.0 36 .............................. ATAACCATTTCATGTATCGTATATCCCACCGATACA 1336766 30 100.0 37 .............................. AGGTAACTTCTAATCTCTAATTAGAAGCTATCCCCTC 1336699 30 100.0 37 .............................. CTCCATAAGCTACCGCACTTTTCACATTGGTATTTAG 1336632 30 100.0 36 .............................. TTGCTTATGGTCCCGCCTTTTATTTTCATCTCTATA 1336566 30 100.0 36 .............................. AATTATGTTAGCCACCGAACAATTCGGAGAGTACGG 1336500 30 100.0 35 .............................. GCTATTTTCTTGTAATTAGGATTAAGTATTCTTAG 1336435 30 100.0 38 .............................. GGGCATAATGGCACTTGACGATGATCATTTGTGCCAAA 1336367 30 100.0 35 .............................. AGCGTTACGGCTGGATTAGCCTCTGCAATAGGCTC 1336302 30 100.0 35 .............................. ACCTTCATAAAGCCTTTGGCAATTAACCACTCAAT 1336237 30 100.0 36 .............................. ACCATAACCGTGATGAAGTTATCGGGGTGGTAGAAA 1336171 30 100.0 36 .............................. ACTTTTAATAATGACCGGCTGCTGCATGGGGTGATA 1336105 30 100.0 36 .............................. GATGCTGGGGTGAAGTTTCTCTTTTGAGGTTTGTGC 1336039 30 100.0 36 .............................. ATTTGTAAAATGTTGATTGGTTGTATCGTCTGACTC 1335973 30 100.0 36 .............................. CGGTTATGGTTGAAAAGCAACGGCGCACCGTTTAAT 1335907 30 100.0 36 .............................. TCATAAATCCCTAAAACAGTTAAACTTGTTAAGCTG 1335841 30 100.0 35 .............................. AACACACCTGGCTCTACTTCTTGGACAGGGTTACC 1335776 30 100.0 36 .............................. GTTTTATATAGGCTGGAGAGCTTCAGGTAATTTTGG 1335710 30 100.0 35 .............................. ACATCTACACAAAAACAAAAGAAAAAAAGAAAACT 1335645 30 100.0 36 .............................. TCTGAAGTAAACAGCTTATCAAGAGTGTCTCCAACG 1335579 30 100.0 35 .............................. ACTTTATAATTATCTGGTGGAGTACTGCTTGTTAC 1335514 30 100.0 36 .............................. CCGTCTTTACAGCAGTAAAACTATCGGAATAGGTTT 1335448 30 100.0 36 .............................. GTCGATATGGCGCAAGTATTGGTGGACTTAAGAAAC 1335382 30 100.0 36 .............................. AGATGTGGAAAGGGTAAGCAATGGCAAACTTTCTAT 1335316 30 100.0 35 .............................. TCTTTAAAAAAAGTTAGAAACTCTCTATGTATAGT 1335251 30 100.0 35 .............................. TTGATTTTAGGTAATAATGACTGGACATCTTTAAT 1335186 30 100.0 37 .............................. AATTAAAATTATTTGAGTTATTAAAATAGTTTATTAT 1335119 30 100.0 36 .............................. TCAGGTCCTGTGCTAAAGTTTCTAAACTCCAAAGAG 1335053 30 100.0 36 .............................. GCTTGGATTGTCTATTGCAAGCAGGAAAAAACTTGG 1334987 30 100.0 35 .............................. AATATATCTTCATCAAAATTATTTAAAGCTTCCAA 1334922 30 100.0 35 .............................. GCTTGATGCACAATTGCAAAGTGAAATTACCCAAT 1334857 30 100.0 36 .............................. TTGATCTTGTTATCAATATGGATAGCCTCCAACATA 1334791 30 100.0 36 .............................. TCCATTTTTACTCTTTTTTTGCTTTTTTATGAAATT 1334725 30 100.0 35 .............................. AATAACCCCTTATGCAGAAGGTGGAATTGTAACAA 1334660 30 100.0 37 .............................. TTACAAAAACAACCTACACGCTTGTCGTTTTATGAAA 1334593 30 100.0 36 .............................. CGGAATGACATCCTTATCAAATGCCGCTTACGGCTC 1334527 30 100.0 36 .............................. ATGCCTGAAAATATCAAGATAGCCTTAATTGATATG 1334461 30 100.0 36 .............................. AAAATAGAAAAGGGCAGGTGATGGAAGAGCGAATTT 1334395 30 100.0 36 .............................. TATCCACAAACTCTTTTATATCGCCTCTTTTAATTG 1334329 30 100.0 36 .............................. ATTAAGTGAATATATAGACTGTAACCCTACGCTAAA 1334263 30 100.0 37 .............................. GCTATATGGATATTGGCTTTCAAGACCTCGTCGTAAA 1334196 30 100.0 36 .............................. TTTTTAAAACTGCCTTTTAGTATCAGTTCAGGTTCA 1334130 30 100.0 37 .............................. GGAAGAGATAGACGGCAAAGAGGTTGTAAATATAGAC 1334063 30 100.0 36 .............................. AAAGAGACGGCTCTATTATAAGCAACATAGCAAAAC 1333997 30 100.0 35 .............................. TTTAAATAAGCTTTGATATCGAGCCAAGCGGTGAA 1333932 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 72 30 100.0 36 GTTCAACCGATACATATGATGTATTGAAAT # Left flank : TTTGCTAAAGGATAAAAAGTGAAGAGTTATAAGTATAACTACGTTTTTTTGATGTATGATATTGCGGATGAAGAGAGTGAAGCGGGAAAATATAGAGTGGCAAAAGTATTTAAAATATGCAAAAGATATCTTTCTCACCATCAAAAAAGCGTATTTAGAGGAGAGATAACTCCAGCAAATCTTTTAAAGTTAATAAAAGAGTTAAAAACCGTTATAGATGAAGAGTTAGATTATATTTCGATTATAAAGCTTCCAAATGCATCCTCATTTTGCGAAGAGAAAATAGGTACAAAAAAAATTGACGGCGAATCTATTTTTATTTAGATTTCCAATCGATTTTTTTTGACAATTTGAAAAAACTATCGGTATAATAGACTGTAGATGAAGTTCTTTGTCAATTTATTGTCAAGTTTCTTTATGATTGGAAAAAATATTTTAAAAAGGCCTAGACTAGGACTTTTTTTGAAAATGAATAATAGCAAAATACCTAAATTATTTTC # Right flank : AGATAGATAAATTTTGTATCTTTAAACATAGAAAGATTCAACGAGAGCGTTAGAAATTTCGTGTTAGTCTGATAGTTAGATAAAATAAGGAAGAGAAAGGACTGACATGGAAGAGAAGTTTAATTTTGAAAAAGCAGTAAAAGAATTGCTATCAGGGAAGAAGATAAGCGGTAAAGACGGAGTATAGTCCTCCTTCGTGCGGGGTTGTCACTACGCTCGGACGGTTACAAGTTTTAACAGATTTAAACAATCGAGGAGTTCAAGATATCCTAATAGTTTCAGTTGATGGGCTTAAAGGATTTCCAGAAGCTATCAATGCAATATTTCCAAAAACAGAAGTACAGCTATGCGTGGTTCATCAAATTAGAAACTCAATACGCTATGTTGCCTCAAAAGACCAGAAAGAGTTTATGAAAGATCTCAAACTTATATATCAAGCTATCTCGTCCGAGCGAAGCGACAACCCCGCAACGAAGTGAGGATAAAAGAGGCAGCCGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACCGATACATATGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA //