Array 1 284553-288164 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJT01000001.1 Moraxella catarrhalis strain 5004663G NODE_1_length_350340_cov_27.728283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284553 28 100.0 32 ............................ AAATGCCCCTCGTAGATTTAACGCTGGGTTAT 284613 28 100.0 32 ............................ ACCGATTTCGGTAGGATTTGGGGCGGTTTCCA 284673 28 100.0 32 ............................ AATTTCATAGCTTATTAGCTAAAAAACAAGCA 284733 28 100.0 32 ............................ TTGTCGCATTAGAGGAGCGATTGTATCCACAA 284793 28 100.0 32 ............................ ACTGTGCATGATATTGATATTTTGGAGATATG 284853 28 100.0 32 ............................ ATAACAGCAACAGGTACAACCGCCGATAAGAT 284913 28 100.0 32 ............................ ATCAGAATTGAACAAATTGTTGGTAAGCAAAA 284973 28 100.0 32 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTT 285033 28 100.0 32 ............................ TTGAATGCATTGCCTAGGATGGTTCGCTCATC 285093 28 100.0 32 ............................ TAGAAAGCGTCCTAGCGTGCGTTATATTGCCG 285153 28 100.0 32 ............................ CACGGCTCTCATGAAAACACCGCTCCAGTCAT 285213 28 100.0 33 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGTG 285274 28 100.0 33 ............................ TTTGGCACTTGCCGCCGCTTGCTCTGGATTTTC 285335 28 100.0 32 ............................ GTAAACTTTACGCCCAATGTAGCGACTATTTT 285395 28 100.0 33 ............................ AGTATGGAATCGGCAACTACTCAGCTTGGCTAT 285456 28 100.0 32 ............................ ACAGGCAAGAATACTTATCATTTTGGGCATTG 285516 28 100.0 32 ............................ AAAAACTGCAAGCACTTGGAATATTGATTTTC 285576 28 100.0 32 ............................ TTTATCACAATGCGTCAAACACAAGAAGCATT 285636 28 100.0 33 ............................ ATAAAAGTGCTGGTAATAGCGATGTAACAGCAG 285697 28 100.0 32 ............................ AAAAGCGTGCAAGTAGAATCTAATTTGCCCAA 285757 28 100.0 33 ............................ GCTGATGTTGCTTTCAATTGTGCCGATTTTGCC 285818 28 100.0 32 ............................ ATACATTGCCACCAATATCAGATAGACTTAAA 285878 28 100.0 32 ............................ TGTGCCAAGTCCTGGTACAAGCCCTGATACTT 285938 28 100.0 32 ............................ CATACAAAATTCATTAAAAATAAGCTCTTGTT 285998 28 100.0 32 ............................ TTTATTTTTCGATATTTTGTGCATTTTACACT 286058 28 100.0 33 ............................ GCCCAAGGGGTTTTTAGCACATACACGCCGTCA 286119 28 100.0 32 ............................ TTCGCCTGCGTTTTGACTTGCCTGTATTTTTG 286179 28 100.0 32 ............................ GCTCGGATAAGCTTTGGTTTGTCGTTGTTAGC 286239 28 100.0 32 ............................ AATGCTTGATACTGAATATTTTAGAGATTTTG 286299 28 100.0 32 ............................ TCTAGGCGTTGTTTTTGAAACACTTTGGCAAT 286359 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 286419 28 100.0 33 ............................ ATGTTCTCAGTGATAACACGCCCAACATCGATC 286480 28 100.0 32 ............................ ACCGACCCGCTGTTGATATTACTTTTTCAGCA 286540 28 100.0 32 ............................ GCATTGAGCATTGATTTTTTCACGCACTTTAG 286600 28 100.0 32 ............................ TCTTCACTGGTACGAATAAACATCCAGCTATC 286660 28 100.0 32 ............................ AGTGATAGGGTATTTTCCTGCCACTTTCAAAT 286720 28 100.0 32 ............................ TCTTCACTGGTACGAATAAACATCCAGCTATC 286780 28 100.0 32 ............................ AATAGATTTTTTAAAAGTTTATTGGTTGTTTT 286840 28 100.0 32 ............................ ACCCAACCCATAGCGTTCGGCAGTGCATAGGT 286900 28 100.0 32 ............................ TCTTGACCACAGTTTACGCACGCCGATTGGCA 286960 28 100.0 32 ............................ AAATTCCTTTAGTGCTTACCAATACAGCTATA 287020 28 100.0 32 ............................ AATTCACGGATTGATGAGGTATGAGACCCCAC 287080 28 100.0 8 ............................ TACTAACT Deletion [287116] 287116 25 89.3 0 .........................--- - Deletion [287138] 287141 28 100.0 32 ............................ TTTTATCATAATTACTTGTTATTTCTTATTAT 287201 28 96.4 32 ...................A........ CACTCAATGTATAACACCGTCCGCACCAGTGA 287261 28 100.0 32 ............................ ACTTGCCCAGTCTGTCCAATCGCTTGTATTGC 287321 28 100.0 32 ............................ CTGGCGGCTGGGAAGTTAAACAAACAGCTTAT 287381 28 100.0 32 ............................ TTCAGTTCTTTCACTTGATAATGAACCTGCTT 287441 28 100.0 32 ............................ TATATCCGCAGAGCTTTAGCAGATAATGGTAG 287501 28 100.0 32 ............................ AACTTTTTAAAATACTGCTTGATGGATTCATC 287561 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 287621 28 100.0 9 ............................ TTTTGCTGT Deletion [287658] 287658 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 287718 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 287778 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 287838 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 287898 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 287957 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 288017 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 288077 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 288137 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 62 28 99.8 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATTACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGTATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //