Array 1 303724-304544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTB010000003.1 Salmonella enterica strain SX113 NODE_3_length_431008_cov_252.751946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 303724 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 303785 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 303846 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 303907 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 303968 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 304029 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 304090 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 304151 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 304212 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 304273 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 304334 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 304395 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 304456 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 304517 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 321090-323133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTB010000003.1 Salmonella enterica strain SX113 NODE_3_length_431008_cov_252.751946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 321090 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 321151 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 321212 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 321273 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 321334 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 321395 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 321456 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 321517 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 321578 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 321639 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 321700 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 321761 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 321822 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 321883 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 321944 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 322005 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 322066 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 322127 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 322188 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 322249 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 322310 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 322371 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 322432 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 322493 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 322554 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 322616 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 322677 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 322738 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 322799 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 322860 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 322921 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 322982 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 323043 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 323104 29 100.0 0 ............................. | A [323131] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //