Array 1 937443-938267 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWQV01000004.1 Pseudomonas aeruginosa strain 18G IPC574_4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 937443 30 100.0 37 .............................. TCCAGGGATCGGGCCGGCTGCGAGAATGAACAGGTGT 937510 30 100.0 36 .............................. GAAAAGAGATCGAGGCCGTCAACGCGGCTATCGAGT 937576 30 100.0 36 .............................. GCGCTCGCCAGGGTCGCGGCGTCGCCATCCGCACGT 937642 30 100.0 36 .............................. CCCGCCAATCGAATCACCAGCATCGCCCTGCTCCGT 937708 30 100.0 36 .............................. GAGCTGGTGGGGAAATCGATTGCTGGCGCCGCAGGT 937774 30 100.0 36 .............................. GTGCTCTGGGCTCACGACCTGACCATGGCCAGGCGT 937840 30 100.0 37 .............................. AAGAAGTACCGCGAGCAGTTGCTGGAAGAACAGACGT 937907 30 100.0 36 .............................. TCGCCAGCGCTGAGCATCAGCCCGCAGCGCCCCGGT 937973 30 100.0 37 .............................. ACGAACACGGTTATCACCGGCGACGGTAACAGCGTGT 938040 30 96.7 35 ...............T.............. TATCCGACCGTGGGGGCAACGCTGTCCAGATTGGT 938105 30 96.7 38 .......T...................... AGCCCTGGCCAGGTCGTAATGACCGCAGCCGGTGAGGT 938173 30 90.0 35 ...........T................CA ACTGCCGTTGTCGCGTGACGGCTATCAGGGAATGT 938238 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 97.4 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGTCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTAGATAGCGCGCAGTGGACACTCCTTAAGCATCGTCTGTGCGACCTAATCAATCCGGAACAAGACAGCCTACGTTTCTACTACTTGGGCACGAACTGGCAACATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTAAATGGCCCACTGATTCTTTAGCGTCGGCGCGAACCTAAAGCGACCGACCTAACCCTGAGGGGTTCGCAGCTCTCTAGCTGATTGATTTATCTACTCTTTTTTTGACGTTAGCAGTTTGATGGCGCGCGCCTTGCCTAAATAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAGTAAGTTATAAGTGGGCTGT # Right flank : GATGGATTTTTGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCTCAGAGCCTGGCCAGGAACTCTTGTGTCACAGTGTCGCGGCCCCAAGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCTTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCTCTCGGGGTGTGGTCCAACTGGTGCAGGGGAGCGTGGTGGCTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 967694-967892 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWQV01000004.1 Pseudomonas aeruginosa strain 18G IPC574_4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================= ================== 967694 28 100.0 29 ............................ GGCCAGGACCTGGCGAAGTGATTCGGGCC 967751 28 100.0 29 ............................ AGTCAGTTCCTGGTGAAGTGGTTCCAGTG 967808 28 96.4 29 ...C........................ GGCCAGGACCTGGCGAAGTGATTCGGGCC 967865 28 96.4 0 ...............G............ | ========== ====== ====== ====== ============================ ============================= ================== 4 28 98.2 29 GAATCACCCAGCTCGCCGCCGGCGCCGA # Left flank : GGTCCAGATGCGGGCGGCGTGATAGGTGTGAAGCGTCAGGGCGACATCGCTGCGGAGAGAGCCGATCTGAAGCCGATGGGTTTCAGCCATGGTGCAGTGTTCCTATATAGGGAAGGGGTTCGGCCACATCGTGCTGATCGGGGTAGGAGCGCGCAGTAGGAAATACATGGTTCGTCGCTGGGGAATTTCCCATGGCGACTCGGAGCAAGGCACCCAGCTCGCCGCCGGCGCCGAGGCCAGGACCTGGCGAAGTGATTCGGGCCGAATCACCCAGCTCGCCGCCGGCGCCGAGGCCAGGACCTGGCGAAGTGATTCGGGCCGAATCACCCAGCTCGCCGCCGGCGCCGAAGTCAGTTCCTGGTGAAGTGGTTCCAGTGGAACCACCCAGCTCGCCGCCGGCGCCGAGGCCAGGACCTGGCGAAGTGATTCGGGCCGAATCACCCAGCTCGSCGCCGGCGCCGAAGTCAGTTCCTGGTGAAGTGGTTCCAGTGGCTCGGGCC # Right flank : AAGTCAGTTCCTGGTGAAGTGGTTCCAGTGGAACCACCCAGTTCGCCGCCGGCGCCGARGYCAGKWCCTGGCGAAGTGATTCGGGCCGAATCACCCAGCTCGCCGCCGGCGCCGAAGTCAGTTCCTGGTGAAGTGGTTCCAGTGGAACCACCCAGTTCGCCGCCGGCGCCGAAGTCAGTTCCTGGCGAAGTGATTCGGGCCGAATCACCCAGCTCGCCGCCGGCGCCGAAGTCAGTTCCTGGCGAAGTGATTCGGGCCGAATCACCCAGCTCGCCGCCGGCGCCGAAGTCAGTTCCTGGCGAAGTGATTCGGGCCGAATCACCCAGCTCGCCGCCGGCGCCGAAGTCAGTTCCTGGCGAAGTGATTCGGGCCGAATCACCCAGTTCGCCGCCGGCGCCGAGGTCAGGACCTGACTGAGTGTTTCGGGCCGAAACACCTAGGCCGCTGTGAAAACGCACAACGCCCGGCCGAGACCTTCTCATGGCTCATCACCCCGCTCG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCACCCAGCTCGCCGCCGGCGCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //