Array 1 8212-10145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRE010000016.1 Listeria grandensis strain FSL L7-1572 NODE_16_length_73613_cov_37.363169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8212 30 100.0 35 .............................. ATATTCGTTATGTATTTTGCCCCAGATGTTCCGTA 8277 30 100.0 38 .............................. TCATTTGACGTACTGACGAAGAATGCTGACGGTACGGA 8345 30 100.0 34 .............................. TTAGTGTAGTAGGATAGGCAATCAGCATCGAGGT 8409 30 100.0 34 .............................. GGAAAGTCGTAACCTACAGAGACATGATGGTGAG 8473 30 100.0 36 .............................. ACTGTAGCTGAGTAATTGCTAGAAGCATTTCAGGCT 8539 30 100.0 37 .............................. CATGGACACGAAGGATATCAACACAGCACGAAATATC 8606 30 100.0 34 .............................. ACGGCATATCATTAGATAACGAGCTTGTATCAAA 8670 30 100.0 35 .............................. GGATTATAGTAGTCCGAGTTACCTTTTTTAAAAAT 8735 30 100.0 36 .............................. TTTGACGCTAAATGTGAGCGTAATTGATACATCGGA 8801 30 100.0 37 .............................. GAGATTACTATGCAGTCATAGCCAATTCCACTAAACA 8868 30 100.0 36 .............................. AAATATCTCCCCTACCAATAATATTTGGCTGACCAA 8934 30 100.0 37 .............................. CTACCGCGGATACGATTTCACGACATCAGACACACCT 9001 30 100.0 37 .............................. TACATCTGGAGCTGATGATTTACCATCTAACACCTTC 9068 30 100.0 35 .............................. GGGATATATTCGTATCTCTGTAGCTTCGCAGGTGC 9133 30 100.0 35 .............................. GACGATTCCATTTGAGGCGATTGAAAAAGTCGAAT 9198 30 100.0 35 .............................. TGTGTCCGTCCGAGAAAGACAAATAAAACTAATTA 9263 30 100.0 36 .............................. GTACTTTAAAAGTATGGCAGCAGGGCTAACTACTCT 9329 30 100.0 34 .............................. AAAGAGAGTCAAAAGGTATTGTCAAATTTATTGT 9393 30 100.0 35 .............................. TTAAGTATGCAGTTGCTGGAATCACTATTCACTTT 9458 30 100.0 37 .............................. ACACCCCTACTAATCGAAACTACTAAGCATGTGCTTA 9525 30 100.0 36 .............................. CATAATAGAGAAGGGGAAGTATTTATGTTTAACATT 9591 30 100.0 35 .............................. AAAGCGACTAAAGGGATCCGAGGCATGGGAGCAGT 9656 30 100.0 35 .............................. CGACATAGAAATTATACCATAGGAGGGCGTTCTGG 9721 30 100.0 37 .............................. ATTTTTAACCGAATCTGCGTTGCTGCCGAATGCTACT 9788 30 100.0 35 .............................. CAATTAGTTTTACAACCCTGGCAGCATTTTATCAT 9853 30 100.0 36 .............................. TACTACAATATCTAGCCATGACTACTCACTATCGTG 9919 30 100.0 36 .............................. CAAGGTGGGATTGCGCTCTATGGGGGGTACTCGGCA 9985 30 100.0 34 .............................. AAAGCCGTAAACACTGTATCAGGCGGAGTTAATA 10049 30 100.0 37 .............................. AACTAAGCTCAAAAGGAGTAACAGCCTATATAGCTCA 10116 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 100.0 36 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : GACCTTGCCGTACGAATCAGATTTTGCCGCCGACATAATTTTGGATGATTTATTAAAAGAAACGATTGCTTTTTTTCATTGCTTAGAGCAGGTTTCACAGTCTAAAATAGATGGAAACACATTATTATATTGCTATGATACGAAAGAATTAGGGCCCGAAATCCATACCGATATTTCATTCGAATCTGACGTTCCTAACCTGTTCTTTATTGGTGATTGCTCCGGAGTCACGCACTCACTGTCACACGCAGCTTGCAGTGGTCTATATTTAGGCAAAGCTCTACGCGACTAAAAAGCGGGAAACGGGACACGAGAAAAACCACCTGGCTAAGAGACACTGTATGTCTTGGCTGGGTGTTTTTTGATTGCTTATGTTTCACTCGTTTTTCATATTGCTTGGAGAAAACGCAGGTTTAAAGCGAATCCTGCCACATGTTCATGATTTAGATATTACTTAGGTAAAAACGCTTAGGGAAAGCAACCGTTGTTTATGCTAAAGA # Right flank : CCCGTGCTATTTCGAGCCTACTCCCATCATACCTCAAGACCCCTAATCTGTCGACCTCCACCAAAAAACAAATTTCGCACTACAAATTCATCCTACCTTTCCCCTCTGGATCGCGAAACCCATTCTACCCCAACACTTTATCAAAATCTGTCGATCCCCCAGTGTTTTTACGCTACTGGAGGTCGACAGATTTTTTCACCCCTTAGAAAAAGTTCGACGTTTTTTCATCTGCTGCTCCCCAAAACTCCTTCTCCAACCATCTTTCCTGCCTACTAGAGAATACAATCACCGAATCTTCTTCCTCACGAATGTATTGATCTAACTCCATCCGTAATTTCACTAACAACGGTGGCGTGATTTCCCCCTCAAAAACTGATTTTTGAACATGCGTTAAGTATTTTTTACAGATTTTAAAAATGTTTCGCGATACTTTTGCGCCACCATTGTCCTGTGTTATATCGTAAATCAAGATAATATACATCGCCATTCACCACCAAATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 37123-37865 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRE010000018.1 Listeria grandensis strain FSL L7-1572 NODE_18_length_54542_cov_34.811842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 37123 29 100.0 36 ............................. CGGAATAACCCGCTTCCTCACGTTTGATTTGAAGCT 37188 29 100.0 34 ............................. GTTGGAGAAGGAAATTATAATGTTTCGGGCGAAA 37251 29 100.0 41 ............................. CGATAAAGGGAAAACATTCCGAACTATCCTCGCTACGTTGG 37321 29 100.0 35 ............................. AAACTCTGATGTCTGGACTCTTTTCAAACTCTTCG 37385 29 100.0 37 ............................. CAAATTGAATTTTGATTTACAGTAGCATCGTAGATAA 37451 29 100.0 35 ............................. ATCGAACTACCTGGATTAACAGGTGAACCGCCAGC 37515 29 100.0 36 ............................. AGTGATAAGCAGAGACTTCCTGTTAAGGAAACGCTA 37580 29 100.0 34 ............................. AAATATGCCTAAGATCAATGAAGCTGGACGCAAA 37643 29 100.0 37 ............................. ATCGAGGCGTACGGATTGCTTACAGTAAAAATCTTAC 37709 29 100.0 34 ............................. AAAGAAGTCAACAACCATATCATTGTCCAACGAA 37772 29 100.0 36 ............................. TTGTGAAAGTTAGTACCCGTTGCAAATTTAGGTGGT 37837 29 89.7 0 ...................C.......GA | ========== ====== ====== ====== ============================= ========================================= ================== 12 29 99.1 36 GTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : GGTAAATGGGCTGGTATGTGTGGCGAGATGGCTGGCGATCAAACAGCTGTACCGTTGTTGCTTGGGATGGGCTTAGATGAGTTCTCTATGAGCGCGTCAAGCATCCTGAAATCACGTTCTCTAATCAAACGCTTAGATCGTACAGAGATGGCGAAATTAGCAGACGAAGCATTACAACAAGCAACAGAAGAAGAAGTTGTAGCGCTAGTTAACAAATATACTGCTGAGTAATCAGAGTAATAGAATGAGTGAAGAAAAACCTGGGAGATTCCTCAGGTTTTTCTTTTTAGTATAAGACCTGTTGAGAAAATCTGTCGACCTCCAGTAGCGTAAAAACTACAGGAGATCGACAGATTTTTGTTAATGACTGGTACAACAGCGATTAGGCTCTTTTCATAAAATATTTTTGTAAAATCAAGCGCTAGAAATCCCGATTTTGTCATCGGTCGACAGATTAGCCCCTTTGAGGTATGATGGGAGTAGGGCTGAAATGGGTACGG # Right flank : AGGATGCTTCAAATAATTATCTGGAATATATAGAAGTTTCATCCAATGAATCCAGAAAATAAATGCGCCTTCAAAATCCGCGACTACTCCAATTTGCATTTTCTTGTAACCACGGGTAAACTTTGTTCTATAGACAAGTGACCAGTCGAAGGAGGAGTTTTGGAATGAATAAAATTGGATTTATCGGTGTTGGTGTGATGGGTGCGAGTATGGTGCAGAATTTGATGAAAGCGGGTTTCGAAGTACATATTTATACGCGGACGAAATCGAAGGCGGATGCTGTTATCGAAGCTGGTGCAATCTGGCATGATACGCCGCAAGAGCTAGCGCCGCATGTGGAGGCACTAATCACGATGGTTGGCTATCCGACAGATGTGGAGCAGCTTTACTTGGCTGAAGACGGGCTTTTAACCACGCTTCGCTCAGGGAGTTTTGCGATAGATATGACGACCTCTTCTCCAAACCTTGCGAAGCAGATCGCAGAAGAGGCGAAGGAAGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 42354-41809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRE010000012.1 Listeria grandensis strain FSL L7-1572 NODE_12_length_105387_cov_31.147232, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 42353 29 100.0 36 ............................. ATTTTAATCGACGGCTTACTACGACAAGGGCATAAG 42288 29 100.0 35 ............................. ATGGCAAAAATCGAACTAACTGTTCACTCAGCCGA 42224 29 100.0 36 ............................. GAATATCGGAATCGAGTAGCGTCATCACTGCACCCT 42159 29 100.0 35 ............................. ACCAGTCTGCTAGTGCTTGCGTGACGTTCTTTATG 42095 29 100.0 35 ............................. TCCGTTGCACCAATGTACTGTTGTACCAATACCAG 42031 29 100.0 35 ............................. GATACTTAACATCGGATCTCTGCCACTACCATTTT 41967 29 96.6 36 ..................A.......... TATGCAACTAAAACGCCTTTATCAACACCTGCGCCC 41902 29 96.6 36 ................A............ TATAGTGATGATGAACGTTGATATAGAGCCATTCGC 41837 29 93.1 0 ................C..T......... | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 98.5 36 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CCTCGTTGAAGTTCCCAATTCCGAGAAGATTTGGGATGCCGACATCGTGCTAATCGCAATTGGATTCGCCGGTGCGACTCCATCCATTTTCAAAGATTTCAAAGTGGCCAAAACAAACCGCCACACCATAGAGGCCGCCAAAGGATTTTACCGTACCGACGTCGAAGGCATCTTCGCATGCGGCGACGCAAGATATGGCCAAAGCCTCGTCGTAACCGCGATCAACGAAGGACGCGAAGCCGCCCGAGAAGTCGATTTCTACCTAATGGGCGAAACATTCCTACCATAAAAAAACAAGAAGGCTCAAAAATCTGTCGACCCCCAGTAGCGCAAAAACTACCGGCGATCGACAGATTTTCTTTATCGGTTGGTATGACTAGGATTAGACCGGTTTTGCAAAGAACGAGAGCAAGGTTAAGCTAACGAAAAAAACGATTTTGTTGTCGATCGACAGATTAGGGCTCTTGAGGTATGATGGGAGTAGGGCTAAAAAGGCACGG # Right flank : CCTATACGAGTTAGCAGAAGGTATAGCGCTACCATTAGGCTTTCTTAGCTATCGGGTTCATTCAACGTAAACCGAGAAGATACAAATGATACTATAACATACAAATAAGAATAAAATACCTATAATCTTTTTGTTGCGTTTTCCGCAAGTATTGTGTAGTCTAAGAAAGGAAGCAAAATAGCATCAATTTGGTAATCTAAATGGTGGGATAGTTATCAAAAAAATGCAAACATAGTCAAAGGTGGGATCGATATGAAAAAAGGGACGCCGGCTTGAACAGATCTGTTTACAATCCTAATTTATAAAATAGTACTATTTTTCCTAGCGATCATCTCATGTATTATTTTTGTATTTTCAAGAAAAAAAGGCAAATAAAGTCGTAAAAATTGGCACGAATCAATATAAAAATAATAGAATCCATAAAGGGATAAATAGGCTCATCGAAATCTGTCGACCTCTAGTAGCGTAAAAACTACAGGAGATCGACAGATTTTGTTTAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //