Array 1 9510-9309 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNO01000192.1 Pseudomonas aeruginosa strain PA28 NODE_192_length_9509_cov_41.656064, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9509 21 75.0 32 -------..................... TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 9456 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 9396 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 9336 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 52274-53678 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNO01000010.1 Pseudomonas aeruginosa strain PA28 NODE_10_length_88963_cov_37.205522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52274 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 52334 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 52394 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 52454 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 52514 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 52574 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 52634 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 52694 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 52754 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 52815 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 52875 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 52935 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 52995 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 53055 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 53115 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 53175 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 53231 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 53291 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 53351 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 53411 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 53471 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 53531 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 53591 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 53651 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63793-62204 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNO01000010.1 Pseudomonas aeruginosa strain PA28 NODE_10_length_88963_cov_37.205522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63792 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 63732 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 63672 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 63612 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 63552 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 63492 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 63432 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 63372 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 63312 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 63252 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 63192 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 63132 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 63072 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 63012 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 62952 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 62892 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 62832 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 62771 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 62711 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 62651 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 62591 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 62531 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 62471 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 62411 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 62351 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 62291 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 62231 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11259-12006 **** Predicted by CRISPRDetect 2.4 *** >NZ_VMNO01000168.1 Pseudomonas aeruginosa strain PA28 NODE_168_length_12062_cov_42.481769, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11259 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 11319 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 11379 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 11439 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 11499 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 11559 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 11619 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 11679 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 11739 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 11799 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 11859 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 11919 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 11979 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCAGTTCACTGCCGTATAGGCAGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //