Array 1 2798-1305 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLU01000122.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008090 CFSAN008090_1205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2797 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2736 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2675 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 2614 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 2553 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 2492 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 2431 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 2370 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 2309 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 2248 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 2187 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 2126 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 2065 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 2004 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1943 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1882 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1820 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1759 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1698 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1637 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1576 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1515 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1454 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1393 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1332 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7168-6487 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLU01000531.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008090 CFSAN008090_548, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 7167 28 96.6 74 -............................ AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 7065 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 7004 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 6943 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 6882 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 6821 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 6760 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 6699 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 6638 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 6577 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 6516 29 96.6 0 A............................ | A [6489] ========== ====== ====== ====== ============================= ========================================================================== ================== 11 29 99.1 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1071-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLU01000464.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008090 CFSAN008090_461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1070 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1009 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 948 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 887 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 826 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 764 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 703 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 642 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 581 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 520 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 459 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 398 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 337 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 276 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 215 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 154 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 93 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //