Array 1 144930-146608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEL010000011.1 Pseudoalteromonas luteoviolacea strain MMG002 assembly_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 144930 29 100.0 32 ............................. TATGTTATGAGGTTTGTGTGATATGGCTACGT 144991 29 100.0 32 ............................. TTATTTGTCAGACTGCAATGTTTTAATAACTC 145052 29 100.0 32 ............................. AGTGGACTCGTCAGTATTATGATACACGCAGT 145113 29 100.0 32 ............................. TTTCAATAATTGCGTCCAAATCCGCATCGGTA 145174 29 100.0 32 ............................. ATTTTCCAGTTTCAGTTACTGAGCCAGAGGAG 145235 29 100.0 32 ............................. CAAAACCCCAAACGTGTTGGCGGCCAAATGCT 145296 29 100.0 32 ............................. CTCAAGGCGTAATTATACACAACGAGAGCAAA 145357 29 100.0 32 ............................. CTCAGACGAAATTGTGATGCCCAATATTGAAC 145418 29 100.0 32 ............................. CAGTATGAACCATTCTGAAAACCACATAAAAA 145479 29 100.0 33 ............................. CGAAATAAGAGTAAAAAAAATAAATAAAGTCAG 145541 29 100.0 32 ............................. CATTATTGCGAGTCAGTTTGGGATGTAGACCC 145602 29 100.0 32 ............................. TTTTTCGCCATTAACATCAGAAGGCCCAGACT 145663 29 96.6 33 ............................T CTTGAACTTCATCAATCAAAATGAAAGCGCCGC 145725 29 100.0 32 ............................. AACATGTTTGCAGTTATTAGTGTTGGATCTAA 145786 29 100.0 32 ............................. GGTTGCGTCTTCCTTATCCTGATGTTGATATC 145847 29 100.0 33 ............................. CTTTTTCTTTGCATCAGATTGAAGATGAACAAC 145909 29 100.0 32 ............................. CGTTTGTTATCGGTGATCACTTGGAGTCATTT 145970 29 100.0 32 ............................. ATTTAAGCTAGTAAAATCTACGTCCAATTTCA 146031 29 100.0 32 ............................. TTGTTTAGTAGTCCAGTTTTCATTGTCTTCAT 146092 29 100.0 32 ............................. GTTCGTATCGATGCAGGTGTTGCACCAACAAG 146153 29 100.0 32 ............................. GCACTCAAATACTTGTTGCATTACCAGCTGTC 146214 29 100.0 32 ............................. CGTTTCTAGCAGGTGTAGGTAATGCACAGAAA 146275 29 100.0 32 ............................. ACAATATGGATTTAGCTGCATTACACCGCGAA 146336 29 100.0 32 ............................. GCGAACTCAATTTGAACATCATCGGCGTGCGT 146397 29 100.0 32 ............................. CATTAACTGATGCAACAACTTCATTGAAGTAA 146458 29 96.6 32 ...........................T. GGATCTGTTTATCAATGTGCCAAATGAGTGAG 146519 29 96.6 32 .............A............... TGCTTCGTCTCAAAGATGCGCACTTAGAGTTT 146580 29 93.1 0 ........T....T............... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : CAAGGAGAAATCATGAAAAAACTATTACTTACAGCGGTGAGCTGTTTAGCAATGAGTGCTGCAGTTATTGCCGCAGATAAGCAATCGACTACTGCTAATCAAACGTTAACGGTTGATGGTGTGACAGCAGCTACTTACCCAGCTCAGCCAACCATTTTAGACCAACTAACCCCATCAAATGCGTGTGAAGCGCGCTGCCAAAGTCACTACGAGGCGTGCGTGAAGTGGGCGCCACCTTGGACAAACTGTAATGATTTTATTAGACGTTGTATGAACAACTGCTCTAGATAAATCCATCTATATAAAAAATGGGAAATATAAAAGGCCAGTAAAATGGCCTTTTTTGTGTCTGATAGCTATTTTTGAGGCAATTTGGGTTTTTATGAGTGGAAAAGAGAGGCAGGTATTTACTGGGTTGGTAAGATAGGTTTGTTCCCAATATTTTTGGTAGATTTTAAGAGTTCAAATTTACTTATATAAATCAATAGTATATTTTTAGA # Right flank : GTCAGTGATCGTCTCGCCATTCTGAATTGCAGCGTGCTCCCCGTACACATATAAAATGTGTCATTCTGAGCTCGTCTCAGAAACCATTCTATTGATTAATAGAAAGGATAATTCAGGCTAGTCTGTAATAAAATATATGAGCAATTGAACACAAAAACAATGTAAACAGTGCCGCATTTTGTCGCGGATCAATGACTTTCTCACCTTGTTTTGATACATTTTGTTCACGTTAATTTTACTAAAAGTGATTTATGCAGGCTAAGGAAGAGCAATATTTTAGATATATTGAGGCGGTGTTATTTTGGCAAGGAGAGATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCAGCGCTCGGCGTTACTTAACAGACTTTATCGCACGCTATCAAATTGACGCGCATTATAACGAGTCTGAAAAAGCCTATGTATTGGCAACCCCCTTTACACCAAATTATATTTCCCAGGACTTTACCGAGTATGCCAGTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156776-159860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEL010000011.1 Pseudoalteromonas luteoviolacea strain MMG002 assembly_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156776 29 96.6 32 ..G.......................... CAGCTTCACTATTTAAAACGCCCCACTCCTGA 156837 29 96.6 32 ..G.......................... CCACTATCAAACAATCCTGCACCACAAAAATA 156898 29 96.6 32 ..G.......................... CTCATATTCGTCCGTCATAATCCTTCTCCTCG 156959 29 96.6 32 ..G.......................... TGCTAAGCACTCGTTTTAGGGTGTTTATTGAT 157020 29 96.6 32 ..G.......................... CCAATGTATTACGATCATACCACAGTTGTAAC 157081 29 96.6 32 ..G.......................... GGTTATGAGTGCATACAATTCACCCAAGATGA 157142 29 96.6 32 ..G.......................... TTTAGTTGCGATGAATAGAGCACCTTTCTACT 157203 29 96.6 32 ..G.......................... CCAACAAATGCACCACCCTGACGATTTTGGTT 157264 29 96.6 32 ..G.......................... GTTTAGCTGTAGTGGTGATTGGTAGAACAGCG 157325 29 96.6 33 ..G.......................... ATGATGACGATATTGCCCAATACACTAAAACAC 157387 29 96.6 32 ..G.......................... ATGATTGCTGAGCCATTACCTGCATTGTTTGT 157448 29 96.6 32 ..G.......................... GATTACCACCCCAGTGGGCCAAGATACACGGC 157509 29 96.6 32 ..G.......................... TACGTAACAGCGGTTTGATTGCTTTATCTAGC 157570 29 96.6 33 ..G.......................... AAAATATAAGATTTATCAAAAATAACGTTGTAA 157632 29 96.6 32 ..G.......................... TAGGTGCGTCTATACGACGAGCCTGAAGTTTA 157693 29 96.6 32 ..G.......................... ACTCAGCAGTTAATGTGTTTTGAGTTAGACGT 157754 29 96.6 32 ..G.......................... CCGATTGTAAAAAAAGGATTTTTATATGATGA 157815 29 100.0 32 ............................. CTGATCAACTTGAGGCATGAGTTGTTTAATCA 157876 29 100.0 32 ............................. TTACTAAAAAACATAATTACCCCCCCTGTCTA 157937 29 100.0 32 ............................. TGGACAACAATGGCGCAATTAGAACCTATATC 157998 29 100.0 32 ............................. GCTTAGAGCATGTGCGTGAACGCGGCCTTGTT 158059 29 100.0 32 ............................. ACTCTTTAAACGTAAAGGATTATCAACATACT 158120 29 100.0 32 ............................. CGTTTACAATCAATTTTTTGCTAAAACACCAC 158181 29 100.0 33 ............................. CGCTTAGCTCTCTAAAACGTTCATCAGACACAC 158243 29 100.0 32 ............................. GATTTAATATGAATATACATATGGTTTTACAA 158304 29 100.0 32 ............................. GCATTCTCTAAAATGAATTTTCAAATCAGAAT 158365 29 100.0 32 ............................. GAGTAATTTAGATGCGTGGACTATCAGAATTA 158426 29 100.0 32 ............................. GGTAGACCGTTTATTGTTAGCTTGTTCCACAT 158487 29 100.0 32 ............................. AACTTGCGCCGGAATATGATTTTGATATGAGT 158548 29 100.0 32 ............................. CAAACTGGCAACCAGTTTTTCGTAGAATGACC 158609 29 96.6 32 ............................A TTCCAATGATTCTTCATAGCTTTTTTGAGTTC 158670 29 100.0 32 ............................. CTGTAGCACAAAATGAGGCCTACAAATCGTCT 158731 29 100.0 32 ............................. GTGTAACAATGCGAGTGACGTGCCCACACTGC 158792 29 100.0 32 ............................. AAACCGTTATTGATGTGCGCGTAGGATACGAT 158853 29 100.0 32 ............................. AGGTTACCCTTAGATATTTAGAGCATCATCAA 158914 29 96.6 32 ............................T TTTTATTTAACTATTTTTAAATAAACGCTTAC 158975 29 100.0 32 ............................. CTAATACGGCGGCTCTTGAGCGAGTCGCAGCG 159036 29 100.0 32 ............................. TTGTTTTGAGCTTCCCATTCTTGCATATCGAT 159097 29 100.0 32 ............................. GCTACCCGATTAGCCATTCAAACCTGTATATA 159158 29 100.0 32 ............................. CGCCTAATTGAGTTAGGCCAAGAACGAAAAGC 159219 29 100.0 33 ............................. TTTAAAGAACTAGCTGAGTTCGCGACCCCAGAC 159281 29 100.0 33 ............................. GGTAATCACTGGCATTATAACCATGACTTATGC 159343 29 100.0 33 ............................. AACATACGCACCATACACAGCACTTTGAGTTGC 159405 29 100.0 32 ............................. CTCCAGCATGTCATCGAACGAGCGTTCAGGGT 159466 29 96.6 32 ....................A........ TTTTTGGCCCAACGTTCGGCTTTACGCTTTAT 159527 29 100.0 32 ............................. AATTCAAAGAACGCACTCACTCTCGAAATTGC 159588 29 100.0 32 ............................. TGTGCGAACATAGCGCGCATATTTGTTTAAGA 159649 29 100.0 32 ............................. TACTGAGCTATAGCGCTTCGAGTCATACTTTC 159710 29 100.0 32 ............................. TGTGGCTGTGTCAACTGGAGTGGTGGCCGTCA 159771 29 100.0 32 ............................. TGACAACAAACTCCCTGCCATCGTTTGTTAGA 159832 29 82.8 0 A.G.........CA............T.. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 98.3 32 GTCTTCCCCGTATGCACGGGGCTAAACCG # Left flank : CGTATGAAGATGCGCAACCTCCAGCAATACCTGAACCAGAATCTATTGGTGACGATGGCCATCGCAGCGGTGGTCCATTATGAGTATGTGTGTTGTTGTAACGGAAGCAGTACCGCCTAGGTTGAGAGGAAGGCTCGCTGTATGGCTGTTGGAAATCAGAGCGGGCGTATATGTGGGCGATATTAGCCGCCGTGTTAGAGAAATGGTGTGGTTTCAAGTCGGTGAGTTAGCCGAAAATGGTAATGTAGTAATGGCATGGGCAACTAATACTGAGTCCGGCTTTGACTTTGTCACTTACGGAAAAAACGCCCGAATGCCAATTGATTTTGACGGACTGAGATTAGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATGATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAAACCTCATATTGTACCTAAAATTTTTGGTAGATTTTTATTCGTTAAATTTACTTATATAAATCAATGGTATAAATTTAGA # Right flank : GAATCTCAGGACTATGGTGCCAATACGTCCATGCGTGTTCCCCGTATGCACGATATTTATCAGGATGACGACGGTTCTCTTGGTGTGTTGGTTTTATTTAAGTGCTCCCTTGGCCGCCTTCCCGTGCTTGCCCCGGGTTCCATATCCGTATTTCGCTGCAATCGATATTTACCAACCAAACTGTAATGGGGGTTTCCACTTTGGCATCCTTTGATGCAACTTGTCACCTTTTGTATGTTGAGTGTCACGATCTGTCAGTGTGTGGCGCGTTTTGAATGCTTATACTGAGCACATTGAATCAACGGGGTTTAAACAGAGGTAAAACACATGGCAAATACAGCATTAATCACAGGCGCATCGGGCGGTATTGGACTTGAATTAGCACACTTGCATGCACAGCAAGGGGGTGACTTAGTCTTGGTAGCGCGCTCTCAAGATAAGTTGGATGCCTTGGCAAAAGAGCTTGAGGTTAAGCACAGTATTAAAACGACCGTGATTAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //