Array 1 32184-32517 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCZQ01000009.1 Edwardsiella piscicida strain LADL99-462 Edwardsiella-piscicida-LADL99-462-contig-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 32184 28 100.0 33 ............................ TGAGAAAGCAGATCACCTACATCGTCGAAGATA 32245 28 100.0 34 ............................ CCCGTGTAGTATGGCTAAAGACCGCCAGCGTTGA 32307 28 100.0 33 ............................ TCAAAATCGCCAACCTCGGTCCCCATCGTGATG 32368 28 100.0 33 ............................ CAGGTCGCCAGACCAGAACGGGTACGCCCCGTG 32429 28 100.0 33 ............................ TGGTATGTTTGTTATTGCAACAATCCATGCAAA 32490 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================== ================== 6 28 99.4 33 GTTTTCCCCACGCCTGTGGGGGTGTTTC # Left flank : CTACTTTTTGGTGCTCTTTACCGAAGTAGTTTGCGACATCTTTTGAGGTGGTAACAGCTCGGCCATCGTGAATAGTGACGACAGGAAGAACGGACCTGCTTAACAACGTTTGAGAGGTAGTCATTTTCGTATCCTTTTTCAGAGGATACCCGAACGGCTCGGGTGGCCGAGTGCTGAAAACTTGTACGAAGGCAAGCGGGCTTATTCCCATCGCTGGTATTGTATTCGCCCACACTCGGCCATATCCGAAAAATGACCATAAAAAAACCGCATGTCTGACGGGTGCGGAGGCCGTTCGTAAGGTGTTTTCAGCACCTGAGCGGACTATACCCCCGACGCCGCGGGTAAAACTAATTTCGATTTATGATACTTTACTTACAAATCATAGGAATTCAATGAATCATTCTAGCCTGACCATACAGAGCCCCATCTGGCTATTCGACCAGTAAACCAACCACAATCTGTAGCTGGTTTAGTATGTTCTTTAACAATATAATGGG # Right flank : AATAGGAAACTGGCCGAGTCACATATCAAGGCCAATAAAACCAGGCTGCTGGCTATGTGGCAGATGGCGGTTAATGGGATGCATCCTTGGAAACTGTAAGAGGCAGCTATCTTGAAAATTATTGATGTGGATGTGGTCGGCGACCATGTTATCGAGGGCGAGTTTAGCGACGGCTTCCGTGGCAGGGCTGATTTAGCCGCACTGTTCAGCAAACCGCCCTTCTCTGCGATCGCCGACGTTAACCGCTTCTCCCTGACGGCCAGCGGCGTGCTGAACAGGGGAGATGCCGAGCTTTCTGCCGATACGGTTAGGCGCATGAGCAAAGGCGCGGTGGTATCGGCATCCTCACGCTCACTCACGCCAGAAAATGTAGAAGCGATCCTCCGCCAGGCCACCTGGAAGTCCATGAGCGAGGGACGCCCGGATATTTTGCAGGCCGCGTTAAGGGGATACGCGGAGCAGCTGGGCCACGCGGACGTCATCAAAAGGGCCGGGATTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGCCTGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40808-40291 **** Predicted by CRISPRDetect 2.4 *** >NZ_QCZQ01000003.1 Edwardsiella piscicida strain LADL99-462 Edwardsiella-piscicida-LADL99-462-contig-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 40807 28 100.0 34 ............................ TCGCTGACGGTATCAAGGCAGGCGTACCTGTTGA 40745 28 100.0 33 ............................ CTACTTTAGCGTCCAGCGCGAGCTAGAGCAGGG 40684 28 100.0 33 ............................ TTCGTTATCGCAAGTGAAGCAGTAAAGCGCGAC 40623 28 100.0 33 ............................ CGATCTCACCTATGCCGGCGGCGAGGTAATTTT 40562 28 100.0 33 ............................ TGAGTGGTTCCGTGACCAAAACCTGATGGAGCC 40501 28 100.0 33 ............................ TGACCGCGGTTTCTATGTCGATGTCGCCTTGGC 40440 28 100.0 33 ............................ CGATATGCCACTCACCGTTGCGGTAGTTGTCCG 40379 28 100.0 33 ............................ TTGAGGATGAGGTACTGGAGCAGATGCCGGATA 40318 28 89.3 0 .........................GGA | ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.8 33 GTCTTCCCCACGTCCGTGGGGGTGTTTC # Left flank : GAATCTCTGTATCGATCTTGCCTTCTCCCTGACGCGTGAGATGGCGGGGCGTTATGAGAAGGCTCTGGTTTCATCTCGTTTTCGAGAGCGGGTGATAGAACTGAATTTGCTCGCGAGTGTAGCCAGAGATATACCACAGCTACTTGGAGGGGCAAATATTGATGCTGATAGTTCTCGCTAACGATTTACCTCCAGCAGTTCGAGGACGAATGAAACTTTGGTTTATTGAACCGCGGCCAAATACCTTCGTTTCCGGTATCAAGGATTCGGTTGCTGACACCGTGATCGAATACCTTTATCAACACTGCTCACCGGCAGCGGGTGTGGTGATATTTAAAAGCATTGCTAGAGCACCGGGGTATCAGATCCATACCATAGGATCACCGACCAAGACGCTCTGTGAGATAAATGGCCTGCAGTTGGTGGTAGAGAAGCGGCTCAACCAGTAAGTCAACCACAATATGTAGTTGGTTTAGTATGCTCTTTAACAATATAATGGG # Right flank : CTGACCCCAATACCTTTCTTGCCTCATCTCGTTTAGTGCGAGCTTCCGCAAGTGTGATGTCCGGGTAGGTTCCGAATGAGAACTTTTTCTCTTTGCCGGCAAATCGATATTTCATCCGCCAGTATTTTGAACCGTTAGGGTTGACCTGGAGATACAGTCCACCACCGTCAGCGAGTTTATAGGCTTGGTCTCTGGGCTTTGCAGTCTCGACCTTACGCGCATTTAAGGTCGTTTTTGGGGCCTCATTTTTCATTGAACAGGATAAGCCCCCACTAAGGCCCCCAAACGTTTATAGATTCACGTTGAGATGGGTAGATATCCGTTGACGTCGCATAGCCAGAAAAGAGGGTTTATCACTGATTATAAGAGGGTTTTATTGAGTTTGGTCGATGTCAGGAGAGGGGGCATGGCGTTCCCTGCAGGAATCGAACCTGCAACTAGCCCTTAGGAGGGGCTCGTTATATCCATTTAACTAAGGGAACATTGTATCGCGTTAATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //