Array 1 32658-30693 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIM01000068.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32657 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 32596 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 32535 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 32474 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 32413 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 32352 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 32291 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 32229 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 32168 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 32107 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 32046 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31985 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31924 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31863 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31802 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31741 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31680 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31619 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31558 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31497 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 31436 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 31374 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 31271 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 31210 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 31149 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 31088 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 31027 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30966 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30905 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30844 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30783 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30722 29 96.6 0 A............................ | A [30695] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5419-6911 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDIM01000147.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5419 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5480 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5541 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5602 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5663 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5724 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5785 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5846 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5907 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5968 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6029 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6090 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6151 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6212 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6273 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6334 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6396 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6457 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6518 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6579 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6640 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6701 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6762 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6823 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6884 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //