Array 1 387-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCLI010000688.1 Vibrio parahaemolyticus strain Vb0786 K-12_388c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 386 28 100.0 32 ............................ AACAAATGTCAATGGCGCAACGAGGGATGCGT 326 28 100.0 32 ............................ ACTAATGGATTATCACTTGTTATTCTTCGTCT 266 28 100.0 32 ............................ TTACTTAGTTTTCGAATGTAAGCCTCATTTTC 206 28 100.0 32 ............................ GCCCTTAGTTTCGCCACCTGGATCTTTAGGAT 146 28 100.0 32 ............................ AGACCATTCAGGACAGTAGGCAGGCTTCCAGT 86 28 100.0 32 ............................ TTCTTTAAATACCTCAATGCCTTGCTTATTTA 26 26 92.9 0 ..........................-- | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATCAAGTATTGAACTTCTG # Right flank : A # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //