Array 1 563082-565724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVFC010000002.1 Chitinophaga qingshengii strain JCM 30026 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================================================================================================================== ================== 563082 27 100.0 39 ........................... TCGTAGTGCGGCTACCTGATTAACGGCTTCCTGGGCTGT 563148 27 100.0 38 ........................... TCTCGCTGGCCGGCGTTTTGGATTTTAAGTTGGACAGT 563213 27 100.0 39 ........................... TTAGCCTCCATAAATCCAGTTGTATACGTTTCAGCCAGT 563279 27 100.0 41 ........................... TGGGAATCCTTGTAGCCTTTCGCATTCCAGCGGAGTAAGGT 563347 27 100.0 39 ........................... TTTCTACCGTAGTATTCTCCCTCATTAAATCCACATTGT 563413 27 100.0 40 ........................... TTCAGATTTCCGGATGCATCGAAATTGACGAAACAATCAT 563480 27 100.0 41 ........................... TTGTGTAACTTCATTCAGCAAGTTTTGTTTGGCTTTCTCGC 563548 26 88.9 40 ......T.A.....-............ TAGCCAATCATGAAACTGCGATTGTAGTGGCTTCGCAAGT 563614 26 81.5 168 ..........TT.G...-..C...... TATATGAGCTTTTACGTGAAACTGCAACCAGTCCAGGTTTTAGTCGAACATAGGAATTGAAACGTTTTTCCATTACCTGGCTGCCCTTTTACCACGAACATCTTAATTGAACTGTAGAGGAATTGAAATGGAGATGATTTTGATTTTAATCTTATCGATCCCTGGAGC T [563624] 563809 27 81.5 38 ......T....T..AT.A......... TGGTAATACGCATGATAAGCATTAAGATTATATTACAC 563874 27 88.9 38 ..A...T...T................ CACCATATCCAGTCTGCTCCATCGCTCCTGTTCTTTGT 563939 27 81.5 40 ....G.T.......A.C......A... TAGCTTATTGACGTCGCGTTCAAAGTTTTCAGCCACTTGT 564006 26 96.3 39 .................-......... CTACACTCTATTTGCATCCATCACACCGAAGCTGTTTGT 564071 26 85.2 39 ......T.A..T..-............ TTGAATTTTATCATCGCCTGCGAAAAGAGAAAGCCGCAT 564136 27 88.9 39 ......T....T..A............ CAACCTAAAATCGCAGCTATACATGGTGAAGCCCTTTTG G [564138] 564203 27 85.2 39 ...........TT.A..A......... TCGTAAAGTAAAACGGGAGTGATTCTGCCAACCCAACAG 564269 27 96.3 38 ........A.................. CTCGGCTGCCATGCCGAAGTATAGCGTTGCCCCCCGGT 564334 27 96.3 38 ......T.................... CTTATTATACCCAGAGAAATGGATAGACGAAAAATTGT 564399 27 88.9 39 ......T.......A..A......... GCTGGTGTATTTACCAGCAGATTCGACCCAGGATTTTGT 564465 27 96.3 40 ..............A............ GAGGAGCGTAATGGCCAGGGTGCTTCCGAATTCGATATGT A [564479] 564533 27 85.2 39 ......T....T..A.G.......... TGTAATATCAAATGGATGTCAGCTGTTTGTATCGAGCGC 564599 27 96.3 37 ..............A............ CATTTCAGACATAATATCTGCATGTGATAGATACGGA 564663 27 88.9 86 A.C...T.................... TATACCCATTACGTCCCATGCTGTTATCTTCTCTTGAGGGAACTGAAACACCATATCCAGGGAGGTCCACCGCCCCTGTTCTTGAT 564776 26 85.2 40 ......T.A.....-.G.......... TAGATCGACGATGAGTCCCAGGGCTTTGAAATCTACGGGT 564842 26 88.9 38 ......T.......-..T......... CTTGGCTACTGTAGTCACAACCGCAAGTGTGCGTCGGG 564906 26 85.2 38 A.....T......-C............ CAGAGTAAGTGACTGCAGCTCCCGGACATGCCTTTAAT 564970 27 88.9 38 ......T.A...G.............. CTTAAACTCAAAGCCGCAGGCGAATCTATTTTTATCGT 565035 27 88.9 40 .......A.C...C............. CACGGTAATTTTCTTGTATTTTAGTACTGGTTAATCCGGG 565102 26 85.2 39 ......T...-..AA............ CACAAATAGTGTGGAGGCGAGACGCTTTTTTCGTTCTGA T [565121] 565168 27 77.8 40 G.....T.A.....A......CA.... TTCCATAAAGTGAGTTAAATTCGGCTGTTACACAAACTAT 565235 26 81.5 39 A.....TA......-C........... GATATTTTTAAAACAAAATACCAGATCCGGATTTCATGA 565300 27 74.1 38 ......T.A.G..CATT.......... TTATTTATTCAGTGCAACTGCGACAAAATCCTCTCCGG 565365 27 88.9 39 ......T....T...G........... GCAAAAATACCCCCTTTTTATCGTCCGTGGTTGTATGGC 565431 27 77.8 39 ....G.T.....T.T.....C.C.... GACGAAATTACAAAACATGTCGGCTTGCGCACTCATCGT 565497 27 96.3 40 ........A.................. TCCGACTTTTGCTATGAGTTGAGCGTCTAGTACATCAGGT 565564 26 88.9 41 ..............-C.......T... TAGTGGTTTATTGTGCGCCTTTATGTCGGAAAAGGACCCGT 565631 27 88.9 40 ......T.A..T............... CAAAATCGTCGGCCGAAGTACAATGATGATGATGCTTCAT 565698 27 92.6 0 ......T.......A............ | ========== ====== ====== ====== =========================== ======================================================================================================================================================================== ================== 38 27 89.9 44 TTTAATCGGACCATGAAGGAATTGAAA # Left flank : CGGGCGTTCATTAATTCCAGTTCTTCCATGAGGTGTTTTACCGTAGTGGCAGTGGATACCAGGCCTTCTTTTTCCGGGGTGTCCACCGTATAGGCGTAGGTGCTACCCGTTACCACGCGGATGATGTCGTTGGACACTGAGGCGATATGGGGGGATACCGGTGCGGCGGTGACGCGGGGTAATGGTACATTACCGGGAACCGCTGTTACCTGTATTGTTGTTAATACCCCTATCAGGGAGATGATGAATTTGCTTTTCATAACAAAAGGGAATTGTGGTTAAAATACGCAATCGATTGAAATTTTTTAGTATTAGTTTTAAAAGTATATTGAATGCGGGTTTGGGATCCTTTGCAATTCATAGTACATTTCTTTAATAAGTCGTCGATCTCCGGGGGAAATCGTATCATTGGCGATCGACGACGGAGAGCGTTCTCAAATTGCGATTGGAGCGTTTGGGAGGCTTACTGGTGGCGGAGGGGTTTGGGCTAATGGAAGGGT # Right flank : AACACACTTCATTTATCCTCCCACAAAATTCTCCGTACCTTCCTCCTCAAAACCACCTCCACATGAAAATCTCCCACCTCGACCACCTCGTCCTCACAGTCGCCGACATTCCCGCCACCTGCCGGTTCTACGAAGACATCCTCGGTATGGAAGTCCAAACCTTCGGCGATAACCGCAAGGCGCTTAAGTTCGGCAACCAGAAAATCAATCTGCATCAACAGGGAAAAGAAATAGACCCTAAGGCGGACCATCCGTTGCCGGGGTCGGCGGATTTATGCTTCATAACGGAAACACCTATACGGGAAGTAAAGGAGGAGTTAATAAGAAAAAACATTCCCATCCTGGAATCGGAAGTAAAAAGAACAGGTGCCAACGGTCCTATTATCTCCATTTACTTCCGTGATCCGGATGGGAACCTGATTGAAACGAGTAATTATTTAGCCATTTAGTTATTTGGTTATTTAAGAATTGTCTATTCAGAAACAGCTCTCTAAATAACC # Questionable array : NO Score: 4.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.50, 5:0, 6:0.25, 7:-0.43, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAATCGGACCATGAAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [23-54] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 223561-223204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVFC010000001.1 Chitinophaga qingshengii strain JCM 30026 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 223560 28 96.4 38 ..............C............. TAGAGCTGAATATGTTACCCTTTCCAATGCGCTGCAAG 223494 28 100.0 37 ............................ TGAAGATTATACCTTATACGGATTTAAACATACCCGA 223429 28 96.4 35 .............T.............. CATTCCATGATTATAGAAAAATTTCAACAATTCAT 223366 28 89.3 42 .............G...CA......... TAGCAGAATTTTACAATCCGCGTTTGAGATAATTGCCTCCTT 223296 28 78.6 37 ........T.A..T..AA.....A.... TTTTGTTTGCCCGGTGACAGTCATAACACTGATGTTG 223231 28 71.4 0 T.........T..GATAAC......... | ========== ====== ====== ====== ============================ ========================================== ================== 6 28 88.7 38 GTTTTAATCGCACCTGGTGGAATTGAAA # Left flank : GCCCTAAAGAAAAGCGGGAGGAGATTATTCCCGCTTTGGCCAAAGCTATCGTCAACTGGCGAATTTCTACCAACCAAGCACGCACCTTTGATCCGATGGGTATTGTTGCCCTGGTCATCAGCGATAACGCCAATCAAATTACTTACGCTATTCGTGGCGATCTCCGGGAGGATTCGGAAAGGCCACAGGCGACACCGGTGATCGATTTAAACGCCAAAGCAGATTTTTTTGTAACTCCTATTGCAGGGAGTTACGTCCCTGGTGCTATAGGTAGCGTAGATGCGCTGGAAAAAGCAGAGGCTAAATTGGTGCAGTTGATGTCTGCTTATGAGTATGATTGAGTGGTTGTTGGATGAGATTATAGTGAATTTATTTTAATAAGTCGTCGATCTCCGGGTAAAATCTTACAATTGGAGGTCGACGACTTTTCTTGGCGGAAAATGGGTCGATGAACTTTTGAAACGCTTACTGGTAGGAGAGGATATTACTGATTTTCAAGG # Right flank : TACCGCAACAAAAAGTACCAATATTTCTTACTTCACCAACAATCAGTTACACAATGTATAGCACAGCAGGTATGCAACAACACACACCTGCTGCACCTCTTATGAAACAACCGCCTCACTCACCGCATAAGCATCAATAATTTCAGCCTTCCACGCCTCAATCACCTCCACCGCCGCCTTATCCGCCCGGTCAAAGAAAAAATGCCGTTTAATATCAAACCCGCAGTAGGTATAAATCCCTTTGTCTGAGGTTAGTTTCAACGCATCATCCATTCCTATTGACTGATATTCCGCCTTTGATTTCCCATGCGAATTAATAATATAAGCCGATTTGCCGGTGAGTAGTCCCTTTTGTACACCCTGATCGTACCGGTACGCAAATCCGTAACTGAATACCCGGTCAATATAACCTTTCATGATAGCGGGCATGCCGGTCCACCATATGGGGTAAATAAAAGTGATGACTTCTGCCCAGGCAATGTGTTCCTGCTCTCTTAAAA # Questionable array : NO Score: 6.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTGGTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 230161-229870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVFC010000001.1 Chitinophaga qingshengii strain JCM 30026 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 230160 30 100.0 36 .............................. ACGTCTGCCACCGTTTTTCCGTATTGCTTCTGAGCA 230094 30 100.0 37 .............................. TCTGCGCGCCGGATCGCAACAAAGTTTTTCACACTGC 230027 30 96.7 35 .....................A........ AATTCGCCGCCGCGCTAAAAGGGTCGCAGCACATA 229962 29 76.7 35 ..C.......C..CT..A-..A........ GCGCCGATCATATATCAACCCCTACAGCCGTCCGT 229898 29 73.3 0 ...C....T.....G.TA-..A.C...... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 89.3 36 GTTTTAATCGTACTATGGGAGGATTGAAAT # Left flank : CAATCCCCAATATGCCTGCGATCGTAATGCAGGAAGCCTATTCCAAAGAGGTGAGTTCCTGTGGCTTCTGGCCGGGGAATGATCAGTTCCCGCACGCCGCTTTTTATGCTTATGCGTATCCGGCTGCGCCGGAATTTGCTGCCCAACCGGTACAGCCGGCGGAGGCTTTCTATAGCCAGGAAATGGGTGAGTTTATGTTGCCCTATGACGCGGTGCAGGCATCAGCCAATCCGGAAGGAATACTGATGGCCTTTTTGAAGTCTACTTATGAGGCCGCGGCGAATACCAGTCACTGGGACCGTAAGGCGCTGGAGTGCGATTTGTCAGATTTGGAAGAGGCATATGGGTGTTATAAGACGAGGTGAGAAATAATTTTAATAAGTCGTCGGTCACCGCGGAAAATCGTATAATTGGGGATCGACGACTGTCTGTGGCAAAAAATAAAGCGGAATGTGTTGGATATGCTTATGGGTTTTGAGGTGTGTTTTTGAGAAGTAAGG # Right flank : TTGAATTGTTATCCCTTCCTGCCCCTCACATAAAATAGCTAACCATTCCACTCAGGAAAATCAAGTGCATTCGATTTCATAACAGCTATTAATTTTGAGATGAGCTGTTGTAGATCCTTGTATGACATATGTTTGATGGTGATTGGAAAAAAGTTTAAAGCGATATAGTACTTTTTAAACTCCAACGCGTTTTAATGATGATGAAAGGCATTTTAATAAAGATAACACCATACAGATTTATGCTGTAGCATTATTAAAATTATTTTATCAACCGTATTTTTTGGAGAAGCTCTTTTATTCTCAAATAAAAGAGAATAACAATTGTTCCCGTTTGTGTACCTAAACCCAAACTAGGATTGTTGACTCCATTCCCTTTTTAAAGAGATTAAATAATAGCAGAATAACATTCTCTATGCGCTTAATTATTTATGTTAACGAAAGCAAAGAAATTATCTATTTCAACCAACATCAAGTATTTCTAACTGCCGCGCTTCACAAGT # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:0, 3:3, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGTACTATGGGAGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 1561757-1565606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVFC010000001.1 Chitinophaga qingshengii strain JCM 30026 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1561757 30 100.0 35 .............................. AAGCCGGGCCATATTCCTTTTTCGGTGCATTCCTT 1561822 30 100.0 34 .............................. TTTATTTTCTCCGTGATCACGATTATAGGGCGAG 1561886 30 100.0 35 .............................. CATCAAGTTCGCGACCTAAGTTCACCCACTGCGCA 1561951 30 100.0 34 .............................. TTACACCTGGGGTGGTGGTCCGGCCAGCACCCAA 1562015 30 100.0 36 .............................. AGGTGACACCGGTATCCTTTTGCCTTTTGTCGAGCG 1562081 30 100.0 35 .............................. TGGGTTATACTTTGATGATTAAAGGTTTAACAGAC 1562146 30 100.0 36 .............................. TTTATGGCATCCTTATGCAGCCAACAACTTTCCAGC 1562212 30 100.0 36 .............................. TTAGGTATAGCCTATGCAGGAGCGCATCCAGATTGT 1562278 30 100.0 35 .............................. AGGAATGGTTAAAGGAAGAAGACCTTTTGCAGACA 1562343 30 100.0 36 .............................. GATGAATCACCCGCACGAATACCATACGCATAATGG 1562409 30 100.0 35 .............................. GACGATGAAGTATTTGCGGGATCTTGGCGCCTTAA 1562474 30 100.0 36 .............................. GTATCGCAGCAGCCTTAATGGCGCCATTCGTATAAT 1562540 30 100.0 37 .............................. ATATCCTCCAGTTCAAGTATCTCATTTTTACACGCTT 1562607 30 100.0 37 .............................. TTTGCAACCTGGCCAGTAGTCGTAGACGAGGGAGATG 1562674 30 100.0 37 .............................. TTGATTACGGACTGAGTGTTGACGGGGTTAACTACCC 1562741 30 100.0 38 .............................. ACTTTAATAACGGGAAACCAACCGACGAAGAACAGAAG 1562809 30 100.0 36 .............................. ATGAGAAACCGGGCCGTCCCGTTGGCAGTTATCGTT 1562875 30 100.0 36 .............................. GGAACAAAAAAATCCGCCAACCTGGGCGGATTCTTA 1562941 30 100.0 36 .............................. AAGCTTTCCGTATTGGCGGGCACCCGCTGGTATAGC 1563007 30 100.0 36 .............................. TGAACTGAAATATTATTTCCATACAAAATGATTTCA 1563073 30 100.0 37 .............................. ATGGGTAAAGAATATTACCCAATCGCAGATTATTAGC 1563140 30 100.0 35 .............................. CCATAAGCCCGGATGAAAACGTAGGAACTAAGATC 1563205 30 100.0 35 .............................. GATTAAACAACTATTCAAAAACGAAAGTATGAAAA 1563270 30 100.0 35 .............................. TCTAAAGTTATCATAAATACCTTTGCCCAGATCCC 1563335 30 100.0 37 .............................. ATCCATTCATAAGTATCAATCAATTCAATCTTTACCC 1563402 30 100.0 36 .............................. AGCTAAAATGAATGCTATACAGGAATTACCAAAGAA 1563468 30 100.0 37 .............................. GTGCACAACCAATTTGTTTTGCTAATTTTTTTAGTAT 1563535 30 100.0 37 .............................. TCGAGTAGTATGAGAGAAATAACACTTGGTCAACATT 1563602 30 100.0 36 .............................. ATGCCAGGATATTGTTGTTTTGCTTCCCACTGGATG 1563668 30 100.0 36 .............................. TCCACTGTTGACCTGGCACTCGCTGATGGGTCACCA 1563734 30 100.0 37 .............................. CGGGAATTAGGCAGCGCTGGTGCCGTATGGCATTCCA 1563801 30 100.0 35 .............................. GAACCTGCGGAAATGATGATGCTAAAGACCACCCA 1563866 30 100.0 37 .............................. TAACTACTCTCCTGTATAGTGTTGTACTTTTTACGGT 1563933 30 100.0 38 .............................. TTAAAATAAAAATAACACTTAACACTAAACGCACTAAA 1564001 30 100.0 34 .............................. CCGGCTGCTGATGCGTGACCGTAGTCACCGGCTG 1564065 30 100.0 35 .............................. AAAGGAACGCTTTAAGGTTTACGAAGACATCAATA 1564130 30 100.0 35 .............................. TGGATACAATAAATGCTTTCCCAGGATGGTGGAAG 1564195 30 100.0 36 .............................. GACCTTCTCCACGAAACACTGCTCCATATAACGGGG 1564261 30 100.0 36 .............................. GCAATAAGAACCTTAGAATAACCTTTACATGGAGCC 1564327 30 100.0 36 .............................. GTGCAAACGGACCGGCCTCGACCCGATGACAAGGCA 1564393 30 100.0 36 .............................. CGACTTCATGCTGAAACACGATAGGCCTCCAACTTG 1564459 30 100.0 36 .............................. TCAGCAGGCAAATTTTGCCTGTTGGTGAATCCGGTT 1564525 30 100.0 35 .............................. CATCCAGGAGGATCTTGAGTCGAAGCTTAAAGACT 1564590 30 100.0 36 .............................. TACAATGTATTATGGCTACGTGCTAAAAAAAAATCC 1564656 30 100.0 36 .............................. ATTATATGAAAAGGGATTTATTACTAAAAACAGAGG 1564722 30 100.0 36 .............................. GGAACAATCCCAGGTATCACCGGCAATGTTGATCTG 1564788 30 100.0 36 .............................. TATTGTGCAGGCCACCTGCCGGCGTCCGCCTGAAGC 1564854 30 100.0 36 .............................. ATAACGAATCCTTATCTGTCTTATCGTTTCCGACAT 1564920 30 100.0 36 .............................. GTATTTCAACCGAACCATTGACGATCTGCTGACCAC 1564986 30 100.0 36 .............................. ACAATAGCAGCGAACCTTACACGCGATGAAATTCGG 1565052 30 100.0 34 .............................. ATGCTACTTCAAGGGCTTTTGCTCCTATATTCAT 1565116 30 100.0 36 .............................. CCCGGACGGGAAAATCCAATCCATCCGGAGTTGGAC 1565182 30 100.0 36 .............................. TCGAGGATGAGCTGCGTTCCGGGAATCTCCCGCACC 1565248 30 100.0 34 .............................. GGATAAGACCCGACAGCTTTTGGCGGGAAGACAA 1565312 30 100.0 37 .............................. TGTAGTGCGTGCATCAAGCGGGCCGGCAACTTCTTTC 1565379 30 100.0 36 .............................. ATAGTGTCGATTACCTTCCCATGGACAGCCACTACA 1565445 30 100.0 36 .............................. ACATATTGCGGTGCCGTAGCCTCGGGTTACTTCGGT 1565511 30 96.7 36 .............................C ACAGTTATATTTTTCGGGAATCCATCTGACGGCGCG 1565577 30 80.0 0 ........T.A...A..G..A........T | ========== ====== ====== ====== ============================== ====================================== ================== 59 30 99.6 36 GTATAATCAGGACCGTAATGGTATTGAAAG # Left flank : TAGTAATTAATCCTTTAATTTCCTATAAATGTATATAATTTTAGTCTACGATATAGACCAAAGAAGGGTCGGAAAAATGCTAAAACTTTGCAGGCAATATCTCCATTGGATACAAAATAGCGTTTTCGAAGGTGAATTGACTGAAGTTAAACTTAAAGAGTTACTTCATCATGCTAAATCTATTATGGATCTATCATATGATAGCATCATTATATTTACCAGCAGACAGGAGAAATGGCTTGATAAAACCGTAATCGGACTTGAAAAGAACAATCTCGACAACATGCTGTAGTCGTCGATTGCCAGAAACACCTCCACTCAAAGCTACCACCAGATCATTATTTCCTTATAAACAATTGATTTTCAATTAAAAACAATAGTCGTCGCTCCCCGGGGGTAATCGTATTACTATCGATCGACGACTATCATTAAACCCAAATGAGGATAATAAATAACTTTTGTCGTTTATTATCAATACATTAGATAATAATAAATGAAGG # Right flank : TCATATTGCAGCCTCTTGCTTAACAAGTTCTCTCATACGTACAATCAGGACCGTATTAAAGTTAGTTTTGATCGAAATTCCACCGTATATCTCTACAGGCGGCCACTTCCTGTCTTGTCAAAACTAAAATGATCGGTAAAAACGATGGATACGCGACGTATATACAGTTATTAATTAATTTATATACTTTAGCATCCAAGTAGGCGTTTATATACCAGACATATTTTATGAAGAAGTATTTTATTTACCTGTTGCCGCTATGCGCGACTTTTGCCTGTGCTGACAACCATAACCAACAAGGAAAGACCGACACTACCACGGCTACTGTTCACAATGTATCCGCTGCGCCGGGCGCCAATGCCAAACCGGGCGTCGATACCGATGCCGTACCCGCCTGGGCGGACTCACTGATCATTGCGTTCTCTCAGGAAACCAGCAATGAACTGATCCGTTTTGCCGCAAAGGAAAAAACGCTCGAATGGATGCTGGATGGGACCGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATAATCAGGACCGTAATGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 4 3565385-3564427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVFC010000001.1 Chitinophaga qingshengii strain JCM 30026 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3565384 30 100.0 37 .............................. GAACAAATCCCAGATATTCCTATTGATGATATTGTTT 3565317 30 100.0 37 .............................. AATTCGTGACTTCCGGGCAACCATTAATTCAGTTATC 3565250 30 100.0 38 .............................. ACATTTGAATCAAGGGCAGCTTTAATCTTTGGCTGCCA 3565182 30 100.0 37 .............................. TGCTTATATGCACCACCCGTAAGATTCTGCAAGAACA 3565115 30 100.0 37 .............................. CACTCGCGGCACCAGTAATACCGACACTCCTTCCGCT 3565048 30 100.0 37 .............................. GTGTATGGTGTGAACATAGCCAAATCTGCACCCCCAT 3564981 30 96.7 37 .................G............ GACCCTAATGCGGTGGATAATACAGATTTGAACTTCT 3564914 30 93.3 35 .............T...G............ GGTAATTCACCATTTATTGCATCGCTCAACAGGTG 3564849 30 93.3 35 ....A............G............ ATAATACCAGTATACACCTTCGTCATGTAATCAAT 3564784 30 90.0 36 .............T..TG............ AGGTCCATCATGAGGCCCAGGGCCTTTACATACACA 3564718 30 83.3 35 ...........G....TG........G..C TAGTTAGTTTCCCGTGATAGGGCGATATCTTTCGT 3564653 30 90.0 35 ......G.........T............C TGATCGTTTAGATGAGCAGCTGAAAATTCAACGAC 3564588 29 93.3 36 ....A.................-....... GACTATATGTACTTGAAAGAAGCGGCGGACGGCACA 3564523 30 96.7 37 .........A.................... TCGTCCGCAATGTCCGTAAAGCGTGGATACTTCGGTT 3564456 30 90.0 0 .................T.A.........C | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 95.1 36 GTTTTAATTGTACCATAAAGGAATTGAAAT # Left flank : TGAGGTAGGTGAAATGGAAGTTGGAGGGGTTCATGGCAATGGAGTTTTGTTTCTACTTAAAAATAATTAAAATATGCATTGAAGGCATATTTATATGCGAATAAATTTTTGCTTTTATTTCCGTTTTGCTTAATTTGCTAATTAATATGCTTTAAAAGCTATTTCATGAGTGAGAAAGTATTCAACCGGATTAAAGCTGTTCTGGCAGAAAAACAAAAGTCCAATAAATGGTTAGCGGAAACGTTAGGGATGAATATTAACACTGTTTCTAAATGGTGTACGAATAAAATTCAGCCTACGGTGGAGACGTTGTTTGCGATAGCGGAGGTGTTGGAGGTGGAAGCTGGGGAACTGTTGGTGAAGAGACGGAAAGATTAAAAGTCGTCGGTCGCCGGGGTAAATCGTATAATTGGAGGTCGACGACTGGTGGAGGTTGAAAAATGGGTATATTGGGTTAGGAAACGCCCTGCTGGTAAGGGTGGGATTTGAGAATTTGAAGG # Right flank : CGTTTTTCGGTATCTTATTGACCATCACAATTAATTGATCCTAAAACAATTTAATAATTTTATATGATTGAATAAGAAATTTGATTTCTTGATTTTCCTCCTCTCCCATTTTTCCCTTAAATTTATATCACGTTTTTAACCCGAAAATTTTAACCAATGTACATCTACAGAACTATCAACCATCCTGAAGGATGGAAAGGGTTAGCCGAATTTGAAATCCGGGATAACCAAATCTTCACTACTGTTCATCATGCCAGTGGCACGCATACGCAGCCTTGGTTTGAAATCTCCAATGACAAAGTCTATCCGACGGTGTATCATCCTAACGGACGCAGTTCTTTTCCATGGTTCGAGATCAATGGAAGTAATTTGAAGGCGTCAGTGCATCACCCGAAAGGAGTGCATGGATTGTCTTGGTACAAGATACAGTAGGATTCCTGATGAATAAGAGGTGTTGTAAAACACCTCTTATTCCATGATATCATCTTGTTTAAGGTAGA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTGTACCATAAAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //