Array 1 300252-300585 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESZ01000019.1 Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01 SEEM801_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 300252 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 300313 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 300374 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 300435 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 300496 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 300557 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : TTCACCTTTCCCCACAATGTCAGAGGTACTAGACGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 109237-107742 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESZ01000014.1 Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01 SEEM801_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109236 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 109175 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 109114 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 109053 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 108992 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 108931 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 108870 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 108809 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 108748 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 108687 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 108626 29 93.1 33 ..........................A.C GCACTCTGCGTAATGGCAAATTCCAATTCTTTC 108564 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 108503 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 108442 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 108381 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 108320 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 108259 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 108198 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 108137 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 108076 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 108015 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 107954 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 107893 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 107832 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 107771 29 93.1 0 A...........T................ | A [107744] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125827-125372 **** Predicted by CRISPRDetect 2.4 *** >NZ_AESZ01000014.1 Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01 SEEM801_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125826 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 125765 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 125704 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 125643 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 125582 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 125521 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 125460 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 125399 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //