Array 1 3156884-3157871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054844.1 Pseudomonas aeruginosa strain SE5357 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3156884 28 100.0 32 ............................ CTTACTATCCCGCTCTTGCCGCCGAGGGCTCG 3156944 28 100.0 32 ............................ ACATGAACCATGGCCTCAAGGCTCTTGCCAGA 3157004 28 100.0 32 ............................ AGGGTGACAGGTCGCCAATTATTACGGCCTCT 3157064 28 100.0 32 ............................ TTTTACCCAGGCGAGAGCGACACCCTCAGAAC 3157124 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 3157184 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 3157244 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 3157304 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 3157364 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 3157424 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 3157484 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 3157544 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 3157604 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 3157664 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 3157724 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 3157784 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 3157844 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3169244-3166396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054844.1 Pseudomonas aeruginosa strain SE5357 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3169243 28 100.0 32 ............................ TGACCGAGCTGCATCAGACGTGGCGCAAGCGG 3169183 28 100.0 32 ............................ TTCACCCACGCCACCTTCGCATCCTCGTCGAG 3169123 28 100.0 32 ............................ TCGACGATCACGTCTTCAGCGCCTGAGTTGAG 3169063 28 100.0 32 ............................ TCATCATGAGCGGAGCGACCATAGGCATCGAC 3169003 28 100.0 32 ............................ AGAGCATGTCCGAGACGACCACATCCGCATCA 3168943 28 100.0 32 ............................ AGGGCGACGAGCGTGCGGCGAGCCAGGTACGC 3168883 28 100.0 32 ............................ TTGGTTTTTCGCGAGTTTAGAAAAAATAAACC 3168823 28 100.0 32 ............................ GGAGCGGCTCTGCTCGCTGGATCGGCTATCAG 3168763 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 3168703 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 3168643 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 3168583 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 3168523 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 3168463 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 3168403 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 3168343 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 3168283 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 3168223 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 3168163 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 3168103 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 3168043 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 3167983 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 3167923 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 3167863 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 3167803 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 3167743 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 3167683 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 3167623 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 3167563 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 3167503 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 3167443 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 3167383 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 3167323 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 3167263 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 3167203 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 3167143 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 3167083 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 3167023 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 3166963 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 3166903 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 3166843 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 3166783 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 3166723 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 3166663 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 3166603 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 3166543 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 3166483 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 3166423 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 48 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //