Array 1 1539865-1540193 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134531.1 Pragia fontium strain NCTC12284 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1539865 29 96.6 31 ............................G CAAATAGCTCAAATCGGCGAGGATGGGGAAG 1539925 29 100.0 31 ............................. ACAAGTCGCTCAAATATTCCGATGTGACCAG 1539985 29 100.0 31 ............................. AGCCCAGCCCGCTTAACTGCGTTCCTCCATC 1540045 29 96.6 31 ............................T CTTAATTTTGAATATAAAAATCCCTGCCAAT 1540105 29 96.6 31 ............................T CAGCTACTCGTCACTGGCAACATTATCGATA 1540165 29 72.4 0 ...........C......A..CC.ACCC. | ========== ====== ====== ====== ============================= =============================== ================== 6 29 93.7 31 CTGAACCGCCGTATAGGCGGCTTAGAAAA # Left flank : GTATGCGGCATTTGTGCGTAAACATAGCAAAAGCCCCAGAGATATTGATAGAAAACGTCAATATTTGCTTAAAAAAGCCGGTGGTGAATGGAATGATATGGCCGAGAAAAGCCTGAGTCGTTTTATTGAGAAGTTACGCTGTCAATTGCCGTTTATCCATCTGGTTAGCCATAGTTCTAAACCGGCAGAAGACGGGGGAAAAAATTATTTCCACCTGTTTATCAACAAAGAGACTGGCGAAGTGCAGCAAGGAAAGTTGACGAAATATGGGTTAAGCGATGTGCAACATCGGACAACGGTTCCTATTTTTTGACCGAATAAATTGATGTTCTTTAAAAAAATAGCGTTAACTTAAATAACCCCTTTTTTTAGCGATGTATTTTCGTCTTATATAAAACAATAAGTTACGATGACCGCTGAAAAAAGGGTATTTTGGCTTAATTTCGGATAGATGTCTGATATTATCAGGGTTGTAGAGGGATTTATTGGTGAAATTTCTA # Right flank : ATAGTCATAAAACCAGCAACTCTTTTTATCTTTTCTTTATGTAAATCACTGGGTTTTTCGCTACATTGACGACGGCTTTTGGCTTTAATCCCTTATTTATCGTCACCTCAGCATCAGATCGCACCTTGATCCACCGCATTTATTTTTCGTGCTGTTATACTTAATTCATTCACCTGACAGGAAAGTCAGTGTCGGTGTATCAGGATAGATATCAGACTATTTGATTTATTGAGGGAGAGAAAAATGAAGTCGTTCATTCTTAAAAGTATTGGTGCCGCCTGCATTGCGTTAAGTATGGCAGGATGTGCCTCTAATATTTCTTCAGATTCTTATTCTGATCAGCAGGTTGGCCAGGCTAGTCGTACCTTTGCCGGAACTATTGTTAGTTCCCGAGTGGTTAACGTGGAAGGTAACAACGAGGTTGGTGGGCTGGTGGGGTCTGTTGCTGGTGGTGTTGCCGGTTCTGCCATTGGTGGTGGTTTCCGAGCGAATGCGCTAGG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACCGCCGTATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3682881-3682253 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134531.1 Pragia fontium strain NCTC12284 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3682880 28 100.0 32 ............................ ATGCGAGAACGCCCGCTCGATAGGTTTGGCTT 3682820 28 100.0 32 ............................ ATAGCGTTGAGCCGTATTTTTCCCGCACGTTT 3682760 28 100.0 32 ............................ GTTCCAAGAAACGGTTATTAACTGAGCATTAT 3682700 28 100.0 32 ............................ AAAGCGAGTCCCTTTTGCGATATTTTTATCAC 3682640 28 100.0 32 ............................ AGCATCAAGAACTGGAAATCTCTGCGGCCGTG 3682580 28 100.0 32 ............................ TCTATCCCTCTAATGTGGTTAAGCGCCGTAAG 3682520 28 100.0 32 ............................ GCAAGCGGATATTGTCAATGTTTAAAGCTGGC 3682460 28 100.0 32 ............................ TTGGCGCAGACATCACCTGTTGAGAGTGGTCG 3682400 28 100.0 32 ............................ ATATTCAGCGCAATTAGTTGAATCAAAACCAA 3682340 28 96.4 32 ..........A................. GTGCTGTTTATGTTGAACATAATCACTGGCCA 3682280 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTCACCTACGTGAGCTTTGTGCGTAAACAGGTGAAATCGCCAGAGCGGATTGAGCGCGATATGCAGCAAAAATCGGCATTGTGGGCAGCTAAATCGGGTAAATCGCTGGCAGAATGCTTAATTGAGCTTGAAAAAAGTAAACCGACCGATCTATGTCGCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCGCCAGATAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCATCCGCAAAGTGCATCGTTGGATGGGGTGTTTGATTGTTATGGCTTGAGTGCTAAAGCGAGTGGTAAGCCAGCATTTGCCACCGTGCCGCACTTTTAAACTCAGGTATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATATTATTTAAATACAATGGGTTGCAATGCGCGGTTTTTAACAAGGTAAAAATGCGATTTTTATCCTAACTGCTTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : GGTATGAAATCAAACTATTCATCATCTACGCAGCATTGCGACAATATGTATCGTTTACAGTTAATCTCGAGAGTATTGGCGGCAAAGAGCCGCCATGCATCAACAATAATTGTTAGGAAGGGAATGTTAAGAAAGGTATTTGTAGTTTGAATCGTCCCCGTACCTCATATCGTACCCATCCCAATTTCTTCTACTTTAAATTATCGGTGATAAGCCTTATTTAATGCGCTCTAGAAGTACACCCGATTCCATATGATGGGTATAAGGGAATTGGTCAAATAACGCCAGTCGACTCACCCGATGAGTTTGGTTGAGGACAGTCAGATTTTCACATAGGGTTTCCGGATTACAGGAAATATAAAGAATTCTTGGGTAATCCTGAACCATGGTGACCGTTTGCGGATCGAGGCCGCTACGCGGCGGATCGACAAAAATGGTTTCGCACTGGTAGCTGGTTAAATCAATGCCTTTTAGTCGATTAAATTCCCTGACACCTTGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //