Array 1 2912037-2910055 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMG01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL01383 2014LSAL01383_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2912036 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2911975 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2911914 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2911853 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2911792 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2911731 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2911670 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2911609 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2911548 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2911487 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2911426 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2911365 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2911304 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2911243 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2911182 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2911121 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2911060 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2910999 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2910938 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2910877 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2910816 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2910755 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2910694 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2910633 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2910572 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2910511 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2910450 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2910389 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2910328 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2910267 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2910206 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2910145 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2910084 29 96.6 0 A............................ | A [2910057] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2929973-2928295 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMG01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL01383 2014LSAL01383_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2929972 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2929911 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2929850 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2929789 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2929728 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2929667 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2929606 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2929545 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2929484 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2929423 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2929362 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2929301 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2929240 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2929178 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2929117 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2929056 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2928995 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2928934 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2928872 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2928811 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2928750 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2928688 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2928627 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2928566 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2928505 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2928444 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2928383 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2928322 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //