Array 1 74291-71479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001402.1 Caldithrix abyssi DSM 13497 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 74290 36 100.0 43 .................................... GCCGGAATTGGGGAGCTCGTTATCGTCTATTTCTTCCCAAAAT 74211 36 100.0 40 .................................... TCTGGTAAAGCCCTGCGTAAGTAACTAATTTGTTACCTTT 74135 36 100.0 43 .................................... ATTTTTCAGAATGCCAAGCGGTTTTAAATGCTATACTGCGGCA 74056 36 100.0 41 .................................... CGAAAAGAAAGCCTACAAAAAGACAAACTAAGTAGTACATA 73979 36 100.0 41 .................................... CGTGAAAAGCCAGTGGTTCTCCGCACTCTGGGCAGAACTTA 73902 36 100.0 36 .................................... TTTCCCCCCTTTTCAAATTCTTTGTAAATTATTTTT 73830 36 100.0 43 .................................... CGCTTCGCATTCCGAACTCATTGCGAGCATAAATTGCTGCCTT 73751 36 100.0 43 .................................... TTCCCTCTCTGCATGCAGTAATTGAGTTTCCACTAATAACCGT 73672 36 100.0 41 .................................... CTTTTAACCAGCTTGCGTAATGCTTCGGCATTTTTCTCTGT 73595 36 100.0 41 .................................... CTTTTGATTTGATCTAACATCTTTTACTCCTTTTCTTTTAA 73518 36 100.0 40 .................................... TGAGTTTCTGGATTAAACACCTTAGGATCACCGCTGTAGA 73442 36 100.0 41 .................................... GAGGATAAAGAAGGGAAGGCTCTACGACGGACGTAAAGCCA 73365 36 100.0 38 .................................... CTACCATTAAGATCTCCTTTTTGCAATAATTCTAACTG 73291 36 100.0 40 .................................... CTATTATCATTTTATTAATAAGTCTAAGAACGGATTCAAA 73215 36 100.0 43 .................................... TAGTATTCATTTCGTCGCTCCTTTATTCATTTTCTTCACTATA 73136 36 100.0 42 .................................... TCACCGCTGTAGAATATTACGGTGTCCCACCATTTTCCTTTT 73058 36 100.0 40 .................................... GGCTGCTGGGGCTTTATATGGCGACTGACTGGTTTCCGGA 72982 36 100.0 41 .................................... CCATTTTCCTTTTTCTACTCTTCTTTTGATTTGATCTAACA 72905 36 100.0 40 .................................... ATGTAATCCGTTTTTGCCTCCTTTTACAATGGTAATAATT 72829 36 100.0 40 .................................... CAGTCTCTTGGATAGACTCAATCGCCTTCTTAGGAATCCA 72753 36 100.0 38 .................................... CATCATATATAGTATTCATTTCGTCGCTCCTTTATTCA 72679 36 100.0 42 .................................... TAATCAGCTGATGCTTTGGATAGGTCTTGAGCACTAAGTACT 72601 36 100.0 37 .................................... CAATTTTAAGAATAAATAATCATTGATCCGTCCGTAC 72528 36 100.0 43 .................................... ACGATTACTTTTTCCATGACTTTTCTCCTCAAGGTTAAAATTC 72449 36 100.0 43 .................................... AGGTCTTCCCAATCGGGGAATAGTTCCCCGAAATAGAAGACCC 72370 36 100.0 45 .................................... AATACCTATAAATTTATCCATAATAAACCTCCTTTTGGTTGACGT 72289 36 100.0 41 .................................... AGGTCTTCCCAATCGGGGAATAGTTCCCCGAAATAGAAGAC 72212 36 100.0 43 .................................... CTCTATGTTCTGTAACTCTAACAATCTCGTGAGCATGTTTTAG 72133 36 100.0 43 .................................... TGAACCACTCACGGTCCGGGCTGAGGCGCTGGGCCGGATAATA 72054 36 97.2 42 ...A................................ TCAGAAGTGGGATTGGGGATAACACAATATAAACATAATAGG 71976 36 100.0 40 .................................... TGCTTTGATAGGGTTAAAATCGACCGCTTCGGCAAGCCGG 71900 36 100.0 42 .................................... TAACCCCACGATATGTTTCATCACTTAAGAAAAACCAGACAC 71822 36 100.0 42 .................................... CATAGCAAGGCCTCTTTTAATTTCCTCGTCAGTAGCAAATTG 71744 36 100.0 37 .................................... GCAGTGTCAACGTGGCCAATAGCCGACGTAAAGCCAT 71671 36 100.0 42 .................................... TTTTTCATTTTTTCTCCTCCTTTTTTGTTTAACTACGCACAA 71593 36 100.0 43 .................................... GAAATCGAAACCGATTTTGGTTTTAATCGGTTCCGATCCTTTT 71514 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 37 36 99.9 41 GTAGAAAAGGAATGACCTGCTTGAAGGGATTAAGAC # Left flank : GCGGCGTGTAGCAAAAACGATACAAAATTACGGCACGCGGGCGCAGAAATCGGTATTTGAGCTGGAGGTGGAGGCGGAACAGATTTCGAAATTGCGTAAAGAGATACAAAAAATAATTGCGGATGAGGATTATGTGGTTTATTTTAATTTGTGCGAGGCAGACTGGCAGAAGCGAGAGAAATACGGTAAGGGACGTTACGACGAGGAACCGAACGAGGAATACTATATTTATTGAAGTGAGCTCCATTGCGTAAGGCATAGGCCTTTAAGCGCTATGCAAACAGATCAAAGTAGATTTGCGCGAACCGGGCGTAACAGGTAAAAAGCGCCTATTTAGCAGGGGGTTCGCGCAGGCTTTGTAAGTTCTTTGAAAACAAGGGAGTAGCTTTGAGAAAAGCGAAGGTGGAGCGGGGATAGGATAAAAAGATACGAGAAAAGAAAGAAGGTTCGCGTACGAGGCTATGTCAATCCCTGATATGAGCGGGTTGGCGGCTGCCGGA # Right flank : GCGGTCGAAGCGAAATCCTTTTCAGAGCCTGTGAAAGATTCTTGCCTAATCCCAGAATAAAAATCTGGGAGATGGGTACAGCAGACCGAAATTACAACTGACAACCAGTGCAAGCAACCAGTGCAGGCAACCAGTGCAAGCAACCTTTATTAAAGCCGCAAAAGCATGGCCGCTTTTATTTGAACCTTTAATCATTAAACCTGGCATGTTTTTCCAGGGCTGGCCTTCATTCCGTCCTGCCCTGGAGGCTGTTGCAAATTCAGTTTGAGTAAAATTCAAAAAATTTGTAAATTCTGGGCGACAGATAAAACAAGTAATAACAAAGGAATTCCATGAGTTTTATTACTTATAATCGCTCACAAATGAATCTCTTTGGCTATAGTGTGGAAGATTTTGCCAGAGACGATCCAAAGAGTCGATTTGTAGTGGAGTTGGTTTCGCGCCTTGATTTAAGTGCACTTTATTCCCGTTATAGTTCACAAGGCGGTGATTCTTATGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAAAGGAATGACCTGCTTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1709776-1711901 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001402.1 Caldithrix abyssi DSM 13497 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================== ================== 1709776 30 100.0 36 .............................. TTTAATTCAAATCCATCATTTTCTTCAGATAGTTTT 1709842 30 100.0 35 .............................. CGCGTCCGGTTGCGTAGCCACGTAAACACTAGCCT 1709907 30 100.0 36 .............................. CCCGGACAATCTGCGAGTTGCATCTTTTATTAAGCC 1709973 30 100.0 37 .............................. AAAACGTTCTTGTTCAAATAACGTTTGCGCAATATAG 1710040 30 100.0 35 .............................. ATCAATAACAATAATTCCAAAGTGCCAGCTATTAT 1710105 30 100.0 37 .............................. GAAGTTGTACACTTTACGTTGTCTTTGTTCATGAGTT 1710172 30 100.0 35 .............................. AGATAAATCTTGCGGATGTTCTTTATAACGCTTGA 1710237 30 100.0 37 .............................. GGCAATAAAGGCTTTGATTTTATTGGCGGTTTGTGCT 1710304 30 100.0 34 .............................. CAGATCGAAGCGCTTAAGGAAGACCGTTCACAGA 1710368 30 100.0 38 .............................. AGGTTACCCCAGGTTGAATCTGTGCAATGTAAGATTAT 1710436 30 100.0 38 .............................. GCCTTGAGGGCTTTGTAGATGACTGATCTGGAAACACC 1710504 30 100.0 39 .............................. AAAGGAGTTACAGCGACTTTAAAAATAGGTTGTGCTTGT 1710573 30 100.0 38 .............................. TACTGTTTACACCACAAGACTGTATCACCTGGAAAAAC 1710641 30 100.0 35 .............................. ATGTGTTCCATTTTTTTCTCCTTTTTTTTGGTTGA 1710706 30 100.0 37 .............................. TTGCTCATAGGACTTGAAAGAATCCGGCAGAGACTTT 1710773 30 100.0 36 .............................. AGGAAAAAGCTTACAGATTTAAGAGCCGGGCAATTT 1710839 30 100.0 34 .............................. ATTTTTTCTTGCTCATGTATTTTTGTATGACAAG 1710903 30 100.0 37 .............................. AGGATATGATAGCCCGGCCGCTCCACTATTTCAACAA 1710970 30 100.0 35 .............................. CCCAGTGTAACCGTATACGAAGTGGTTTCACCAAA 1711035 30 100.0 35 .............................. GCGCAAATAAGCATAACTAAACATAAAGGGAAAAG 1711100 30 100.0 34 .............................. AATATATTCTTATCGAAATACGTTTGGCCATAGA 1711164 30 100.0 34 .............................. AAGTTTTAAAGCAAGAAAACAAATTTAACCTCGA 1711228 30 100.0 37 .............................. CGGCTATTGCCCTCCTATTTTAGTTTTAATAAAAAAC 1711295 30 100.0 34 .............................. GGATGCAATCTGACTGTTTTTTTCCTGCCTCTTA 1711359 30 100.0 38 .............................. ACTCTTAGATAGGCCGCGGAGCTGTCAGGAATCGGAAT 1711427 30 100.0 39 .............................. GGTGAAAACTTTATTGCATCGCTAACCGGTTTAACCAGA 1711496 30 100.0 36 .............................. CATAATTAATAGCTTTTTGTATAGCCTGTGTATCAT 1711562 30 100.0 36 .............................. CCGTTGAGCTTCGGCTGTACACCGGTATCTGGCTTA 1711628 30 100.0 36 .............................. GCCTTATTACTTTCTTCAATCAGTTTATCGACGTTG 1711694 30 100.0 36 .............................. TTTAACTCAATTACGAATTAAGAATTACGAATTACG 1711760 30 80.0 82 A...........CA.....A..T...G... AAAGATGGGGGGGATTCCTGCTTGTGTGGGAATGACGGTTGGAGCGAAGCATGGAGGGGATTCCCGCTTGCGCGGGAATGAC 1711872 30 76.7 0 ....GG.G...TC.G.......G....... | ========== ====== ====== ====== ============================== ================================================================================== ================== 32 30 98.6 38 GTTTTAATCGAATCAGAGTGGGATTGAAAC # Left flank : AGTTACGGTCATTTAATTAAGCTGGAGTGCTACAAATTGATTAAAGATATTTTAGGCGAACAGCCTTATAAACCGTTTAAAATCTGGTGGTAAAAGGAGGAGGGAATGGAGCCGTGTATGTGATTTTGGTTTACGATGTTGGCGAAAAACGCGTGGGCAAAATGCTCAAATTATGTCGTCAATATTTGAATTGGATTCAGAATTCGGTATTTGAAGGCGAGATTACGTCGGTAAAATTAAAAGAGCTATTGAAGAAAGCGAAGCGTTTGATGGATATGGATAACGACAGCATTATTGTATTTAAAAGCAGAGATATTAAGTGGTTAGAAAAAGAAATAATCGGTCTGGAAAAGAATCCGCTGGACACCATGCTTTAAGAGTCGTCGAACCTCAGGGGAAAACGTACAATTAGAGATCGACGCGGCATCTATTAAAAATATGCGGAAAAGGATTTGCATAAGCCATTGAAAAATGGTATTTTTTTTGAGCCTGAACAACGG # Right flank : CAGGCACGGAAGGGATTCCTGCTTGTGTGGGAATGACGGTTGGAGCGAAGCATGGAGAGGATTCCCGCGTTCGCGGGAATGACGGGTCGGCGGGGCGTTTTAATTTGCCTGGCAAAGCACCTTCTTTGTTTTCACTCCGAATTTGATTATATTTAAGCGTAGCGTGTAATTTCCCTTGAACAGCGCCGATTCGATTGCCGACTTGAGAACCGATACATACTTGAAAAAAACCGGAAATATTTTTAAAAAAAATGCGTTAATTATGTTTCAATTGACAACGGTAAATTAACAATAAAAGGAAATACAATGAGTCAGAAAAATTTAAAAGAAGAAGATTTAGAATTACAGGAGTGGCGGGAATCTCTCCAATATGTGATCGAGCGCGGCGGCCCGGAGCGCGTTAAAAAGTTAATGAGCGAGTTGCAACAGCAGATTTACGCTTCCGGCATAAAAATGCCTTTTACGGCCAATACGCCGTATATTAACACCATCCCTGTAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAATCAGAGTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 4197090-4196818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001402.1 Caldithrix abyssi DSM 13497 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4197089 37 78.4 42 ACAAAT..T.C.......................... ACGCCCCGCACATAGGCGGAGCCGCACCGGGCTTAAGGTCTG 4197010 37 100.0 43 ..................................... TGTATACTTTGTCCGCTTTTTTGATACCTGCAATATCGTTATC 4196930 37 100.0 39 ..................................... TTTTAGAATGGATATTCTTCGATGGTTGATGGGTCGATT 4196854 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 4 37 94.6 42 GTCGGAAAGTACCCCGTTATTCAGAGGGGATTGAGAC # Left flank : ATTAACAAATAATTGCCTCGTTATTCAGAGGGGAATAAGACGGGATATTTGCTATTTTCTATTTAATAATTAAATTTAATGTTAATCGTTATTTAGATAGTAAAAGTATAAAGACAGTAAAATGAAAGCAGATGATTTAGAAAAGAGATTAATCGATTTTTCTGTAAAAGTAATAAATATTTGTAAAATTATGTCAGAAGATTATATAAGCAGGCATCTTTCGGTTCAGTTGTTGCGGAGTGCGACGTCTGTTGCAGCCAATTATGGTGAAGCACGTGGTGCAGAAAGTCGAAAGGATTTTGTGCATAAATTACGAATATGTTTGAAAGAGTTAAATGAGACTACAATATGGCTAAAAATTATTGAAGGCAGTAATTTTATTGAAGAAAAGGATATTAGAATTCTATTGTCTGAGAGTAAAGAATTACAAAAAATCATTGGCTCTAGCCTATCAACCTTAAAACAATCCAAATAAAATATCAAATATCAAATAATAATTA # Right flank : GAGGTATTTTCTATTTATTATTTACTATTTAAGATTTTTTGCGCGAGAAGGATCTGTTTTTATCACTATGATTTTAATTAAATAGAAAAAATCCGTGCCAATCCGCGTAATCTGTCCCATCTGTGTTCAAAATAGCACACGGATGGCGCGGATGATACGGATGGACGCGGATTAAAATTTTTTTAAAAAAGATAGTTCTTATTGTGTTAAAAGATTTCTCTCCCGCCAGGACGGAATGGCGATTACAATTCTTCCAACTTTATATTGAAGTCCTAAATAAAAAAATCCGTGCCAATCCGCGTAATCCGTCCCATCTGTGTTCAGAAAAGATAGTACACGGATGGATGCGGATTAAAAATCCTTTTAAATAAAAAAGATATTTCATTATTGTAGTTAAAAGCTCTCTCTCTTCGTTGGAAATGACAATACGTTCTGTTTAAAAGTGTAATCATAAAAAAATCCGTGCCATCTGTGTTCAAAATAGCACACGGATGGCGCGG # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAGTACCCCGTTATTCAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //