Array 1 44900-44729 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013655.1 Enterococcus rotai strain LMG 26678 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 44899 33 100.0 34 ................................. GTTGTTCTTGATCCATGCGTCCTCGCGCCTCCAA 44832 33 100.0 38 ................................. ATATTATCCCATCCTTAAACTAGTGTTGTGTAATCTAA 44761 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 3 33 100.0 36 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : AAGAACAGGGACATTTGACCGTGAAACATCTGGTTATGCGGTTGTCATGACCAACGCAAAGGCTGGGGCAAAAAATATGACGATCAGTGCGCTCCATGCTGGGAAAGTCTTTGTTGACATATTGGGGAACAATTCAACAAAAGTAATGTTGGATGAATCGGGTAGTGGAACGTTTCCTGTAAATGACGGAGCGATTTCTGTCTATGTAAATGAAGAAATTGTAGAAAAATTAAGTAAAGGAGTTACGGAGACTTTTGCTGGAAAATAAATAGTGCGTGACTTTTTTTGGTAGAGTAACTATACTAAATGTAATAGATAAAAGGATGAAGGCTGTAATTTTGGTGCGAACCCCAAGTGCACATGAAAACACTAGGGGATTCGTACCAATTTTTGAGGGAAATTAGGAGTAAAGTTCCTGTTTTTCTCATTGAATTCACACTTTTTTGAATGATTAGTGTGGGAAGGTAGTAAAAGTGTAATGTTTTTATTGCTTTTTCACG # Right flank : CGCACGTTTAAACTCCGCTATCTGTTCGGCAGTGGTCTCACTCTTTAACGAAGACAAAAATCATTTCTATGATTTTTTTGTCTTCGTTTTTTTATGTTTGACGTATGTTCAAACTTGTTATCATGAAACCAATAACTAAAATAAATTGTTGTAGAAAAATAGCAGGTTGATCAAAAGAAAAGATTGTCCTATAAAACAGTAACATTATTGAAGAATTTTCCTACTATCATCTAGCTTTACAGATTAAACCTTTCGGTAATATTCTAAAAAAAATTCATGGTGGCAAGCACCAATAAATTTTTTTATATGTTATTACTCAAGGTTTGGTCAATCTGTTCAGCTTTTGTGTTTTTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCGAGACAAAAAGAAGCCGTTCTACATACTGAAGGGCCTTTATTAGTGATGGCGGGAGCAGGCAGT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 130885-130581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013655.1 Enterococcus rotai strain LMG 26678 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 130884 33 100.0 35 ................................. CCTTGACCAGTTGGAAAGGTTCGCCGTGTTTTGCC 130816 33 100.0 34 ................................. CTCATTATAGCAACTTTGATAAAACAGCTTATAA 130749 33 100.0 35 ................................. ACATCACTTGACCAGCTGATGTCCGAACCGTGTTC 130681 33 100.0 35 ................................. ATTGCACGGTAAACATGAACACTTGGTTCAAATGT 130613 33 75.8 0 ..........A......A....ACTT..TT... | ========== ====== ====== ====== ================================= =================================== ================== 5 33 95.2 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : AGCACTTCGAGTTTCTACAGAAAATGTGGGTGAAAGAAGATCAGCAGTTATCACTTAATTTTGAAGAACCACTGTTAGTTGCTGAAGAAAATTCAGAAATTTTCGAAGATTATTCACAAGTTGTTTGGCAAAAGCGAACCTTAGGAGAAGTAACACATATTTTCAGTCATTTAAAATGGCATATCCTGGTTTTTTATGGGCGTCAAACAGGATTAACAGTTAAGAATGAAAACCAAGCTTGGGCAACAAAAGAAACATTCTCAAACTATGTTTTTCCAAAACCCCAGCAAAAGATGTTAGATCTGTACAAAAAAGAATTTAGAAAAAAAGAATAATTTCTTGGTGCTAACCCCAAGTGCGCATAAAAAGCCTAGGAGATTCGTACTAGAATTTTGCTGATTTTAGTAGGAAAAGAAGCTTTTTCTCATTTAAATTTAATGTTATACTAGTTTTAGTGGTGGAATGGTGAAGATATGTTATGTATTTTTGTCAATTTCACG # Right flank : TACCTCAATTTCAACTTCAAAAAACTAAAATAATTCTCTATATTTCAAAAGATATTCTTGATTGCTGTGAGAAAACAAACTACTTAGTATGCAAAGCTGAAAATTATGATATAATTATAATGATATCGGTGTAATGAACACCCAAACGAAGAGTAATCAGCTTTGAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATTCAAAGTTACAAACACGATGGACATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGCGAGTATTCTTTGATTGGTGTCAACGATCATACTTTGGTGACAGAGTCTGATGGTAGGCGTTGGGTTACTCGTGAACCAGCTATTGTTTATTTTCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCTTATCTTTTAGATGATGAAGCGTTGA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2248153-2248454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013655.1 Enterococcus rotai strain LMG 26678 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2248153 33 100.0 36 ................................. GTGAAACAAAAGAAGCGAATCTATCAGATTTGAAAA 2248222 33 100.0 35 ................................. TAAAGGTACAATCATTATGCGTGACAAATTAGTTG 2248290 33 100.0 34 ................................. AATTCATCGGATTTTGATATCGTGGACCATTATT 2248357 33 100.0 33 ................................. AGTGGATCTCGGCTGCAATCATTTTGGAATCGC 2248423 32 84.8 0 ...................A....A.G.-..T. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 97.0 35 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : ATGAAGATAAGAGGAAATGATTTTGGTGGTATCAACAATTCAACTGTTGTGATTGGGAATAATAATAAGGTTACAAATGGAACGAATGAGGAAATCGATTGGGAGCAATTCTCTGCAGAGATTATGATAACGTTGACAAAACTTCCACAAGATAGTAAAGAGTTTCGAGCTTGTTCAGAGTTATTAATGGAATCGACTTCAAAGGATGAAGGAAAAGTTGCGGCATTTTTGAAAAAGCATGCAGCGCAATTTAGTTCTGATGTTTTCAGTAACTTGGCAAGTACACTTCTTGCAGATACAATCAAGAAGCTGATGTTTTAATAGATAGTCATTATTTTGTGGTGCGAACCTTAAGTGACCATGAAATCACTGTAGGATTCGCACCAATTTTTGCTAGAGAAAAGACGATTTTCAGCGTTTTTTCTCATGTAAATCACAGAATAGTGATAGAGTTTAGGTGGAAAGTAGTGAGTGTTATAAGAGAATACTGCTTTTTCACG # Right flank : TTTACTCCTCAAAAGAGAAAATCATACTTTTCAAAGCACTTATTTTTTTGGTAGCACAACTAAAATAACTTAATAAATCTAGCTATTTAAATCTTTTCTTAAAACGACTCAATAGAGCTAGATTTATTTAGTGTTCCCAATTTTTTGTCAGAAAATATAGACAAAGTTAAATACTTTATATAACATAGTAGTTATCATTGTTAATTATAACGTGGGTACAAAAGAGGGTTAAATCAAGGAGGAGTCAATAGATGAAAAAAATAGTGAAATCATCAATGGTTGTGTTGGCATTAGGATTAGGACTGTCGATTGGTTCATCTGAAGAAGCAGATGCGATGTATGAGTCGCCTTATTCTTATTTTAATGATTATGGCATAAGGCAAGGTTTATTCTCTGATGTCGATAGTCTTTATTCTAAGCGTTACCGAGCTGAAATGGATCAACTGATGGAGAAACATGAAAAGGGCTTGATTTCTGATGATGAATTCGATGAGCTATCT # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.80,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3574580-3574414 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013655.1 Enterococcus rotai strain LMG 26678 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3574579 33 100.0 33 ................................. ATCATACCAATCAGCATCACCGGCTTTAATCGC 3574513 33 100.0 34 ................................. TGCGTGATCGTTTAGCAGGAGCTGGAGTGCTTTC 3574446 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCTCACTCTGTTATGAGTGAGTGGATTGAAAT # Left flank : ACAAAATTTGGTGATGGTGGAGCGGACATTTTACCATTATTCCGTTTAAATAAACGTCAAGGTAAGGCTTTATTAAAGGAGTTAGGTTCTCCTGCTGAATTATATACGAAAATCCCGACTGCTGATTTAGAAGACGACAAACCTTTAGTGGCGGACGAGGTAGCACTTGGGGTAACCTATGATGATATCGATGATTATGTTGAAGGAAAAACAGTATCAGAGAAAGCTAAAGAAATAATTGAAGGTTGGTATAAAAAAACACAACATAAACGTCACATGCCAATTTCTATTTTTGATGATTTCTGGAAATAAGAAATGATCAGCTCATTTTGGTGCGAACCCTAAGTGCCCATAAAATTACTGGGAGATTCGCACCGAAAAAAGGACAGATATAAGGGCTATTTAGAGCTTTTTATCATTTTATTTTAATGTTTAAATAGTTTTACGTGGGAATTTAGTGATTGTCACCGATTTTTCGTAGATAATCGCTTGTTTTCACA # Right flank : GACTCGGTTAACAGACAACTAAAGATAAATAAAATCTCAACCAAATCCCATCAAAAATAGACTAAAAAAGAAAGACTAAAAATTTAGCCTTTCTTTTTTTAGCGAATTTTTAATCAGAGTACCTTCAGTTTGTGCAAATGGTTAAAAAAAGTGTAAACTTAAACTAGTTCTCTGAAATAATCGATGAATTATTCTACAATTGAATTAATTACAGCAAGAAAAAGGTGAATGAAAATATGAAAAAATGGTTTAGGAAAAAAAGAAATATCGATAACGAGGAGTTTCTTTCATCTGAAGAAAAAACACAATCAGTTAATACTAACGACATTCGGATTCCAAACGATATCAATGGTTTGTCCGATCAAGAAGTCGAACAGCTATACGCAGAAGGAAAATACAATAAAGAAGTCGAAGATTTATCTAGAACGACAAAACAAATCATTTTAGATAATTCACTAACATTATTCAACTTTATCAACCTATTTTTAGCAATCGCAGTT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: R [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.40,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //