Array 1 887734-887935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059140.1 Lactobacillus crispatus strain B4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 887734 29 93.1 32 .......................C....C AGTTTAGGTACCATTTTTTGACGATCAAAATC 887795 29 93.1 32 ............AG............... AACAGCAGAAAGTGGGATGCATTGTGGAGCTA 887856 29 100.0 22 ............................. TTACGTGACTGACTAAAAAACT 887907 29 69.0 0 .A.........AC.........CT.AATA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 88.8 29 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATAGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGACTTATAAATAGAATTTAAATTCTAGGAGCACTTTGGGGGGCGAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGGCTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATGTGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGCTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAATAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:-0.29, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 890661-891975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059140.1 Lactobacillus crispatus strain B4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 890661 29 100.0 32 ............................. AGTTTCATCTAATTTAATCGCAGTAAAGCCTG 890722 29 96.6 32 ............................C GTGTAATGAATTGATTCCGTTTGATCAAAAGA 890783 29 100.0 32 ............................. AAATTCGTTATTGCTGATTCTGACGTGGAGAA 890844 29 100.0 32 ............................. AATTGGAATAAAGATGGTATTTTTTCAACTCT 890905 29 100.0 32 ............................. TAGCCACCCTGTATTAGTATTTAAACTCTCAG 890966 29 100.0 32 ............................. ATTGTGCCTATTAGTTCATTCATTATTTACGA 891027 29 100.0 34 ............................. AATCTGATGGCTGGAAAGAAGTAAATACATGAAA 891090 29 100.0 32 ............................. AAATCGTCTGTTGCTGACATTAAGCTCACAAC 891151 29 96.6 32 ............................C AACAGCACGACCAGAAGCAGGGTATTTAGTTC 891212 29 100.0 33 ............................. ATGACAGTTTATTCATTTGATAAGGAATTCGCG 891274 29 100.0 33 ............................. ATGACAGTTTATTCATTTGATAAGGAATTCGCG 891336 29 96.6 32 ............................C AAGCTGGTTCAATTGAAGCAAAAGAAAAACAA 891397 29 100.0 32 ............................. CATTTCTTCAAGTTGCTTATCGGACTTCTTGG 891458 29 96.6 32 ............................C AAGGGTAGTTCGTGCAGACGGTCAAAACATTA 891519 29 96.6 32 ............................C ATTCCATCTCTAAAGTTTCGCACTGCATTATA 891580 29 100.0 32 ............................. GATGGTAAGAAGTTCGAAAATGACACAGCAAA 891641 29 100.0 33 ............................. CATCTGCAGAGAAAGACAAGTAAAATACTTGAA 891703 29 96.6 32 ............................C AAAAAGACTTTGCCGACAAGTTCATTGAAATT 891764 29 96.6 32 ............................C ATATGCAGTACGTAAAATTTATGAAAGCAATC 891825 29 93.1 32 .................A..........C GGTAGTTTATAAAGTTGTGTAATAAATTTTTG 891886 29 100.0 32 ............................. CCAATTTTGGATGAATTAAAGCTGAAATTTAA 891947 29 86.2 0 ............TG........C.....C | ========== ====== ====== ====== ============================= ================================== ================== 22 29 98.0 32 GTATTCTCCACGCATGTGGAGGTGATCCT # Left flank : TTGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAAGAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAACTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGTTTGTTTTTACCTAAGCTAGTTAAAAACGGATGATAAAGCAGGATTACAGCTAAAGTGGTAGGGTGAGATTCTCAATCGTGAGCGAAAAAGGATTGGCAGACAAATAATATATTTTAGCTTAAGAGAAATCATAGCTGAATGATGTTATGATTTCTCTTTTATTTGGATATTATATCAAGCGGATATTGTCTATTTAATAAGAATTGATATACTTGGTAATAGGATCAAAGTGATGAAAAAATGGTGTTTGCATATTTTCATTTAGCGTTATAAAGGGATTTGTTTACT # Right flank : CCTGCCTGCCTTAAGAACTTGGCTACCTGCTGCGTATTCTCCAGGTGATCCCAAAAAATGAAAGGACTGTTTAATCGTGATACTAACGCCTAAAGAGTTAGATAATGTGTTAGAGTATACGGATTATGCACCATTACCAATATTAAAAAGTAATGCTACAGATAAGCAAAAAATTATTTATGCCGATTATATTGTTGAACGCTTAAATGAAAATAAAGTAGTTGCTCCTTTTTTTAATAAAAAGTGTAAATAACATAATCTTATTTTTTAGAAAAAATATAGCTTAGAGAATCATTGTATTCTCCATATATGTGGAGCTGATTTAAAAAAGTAATAACTATATTTTAGATATTCATTGGTATGAGATAAACGAAGAGAAATTGTATTTACCTAAAACAAAGAGGGTATAAAAATGATGAAACTTAAATATATAGGCGAGACTTTTTATGATGGACTAGGCTTAACGAATGGTAAAATCTATGAATGTTTAGGTGAAGAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGCATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 906929-907202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059140.1 Lactobacillus crispatus strain B4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 906929 29 100.0 32 ............................. TAATGGGTATTATGGATTACATTCATGATCGC 906990 29 100.0 32 ............................. CAGTATCTAGCCTTGCTCATGCTATTAAAAAG 907051 29 96.6 32 ............................C ATGGCTTGCACTAGGATCCGGTGCTATACGTC 907112 29 96.6 32 ........................C.... ATGCAGAGTGGCGTGCATGTCATGATTACAGG 907173 29 82.8 0 ..G..........A...........AA.A | C [907195] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCAAGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //