Array 1 410396-409399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032514.1 Actinomyces lilanjuaniae strain 2129 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 410395 36 100.0 28 .................................... CCCTGGCCCTGATAGCGGTCTTCGCCCA 410331 36 100.0 28 .................................... CGGAGACCTCGGTGAGGGTCTGCTCGCG 410267 36 100.0 28 .................................... GCCTGTGCCCGCAGCTCAGCGCGCGTCA 410203 36 100.0 28 .................................... TCCTGGTAGTAGGGGGTGGTCATGACGT 410139 36 100.0 28 .................................... GGTTGATCGCGATGACGTTGCCCTGCGG 410075 36 100.0 28 .................................... CTGGCGCAGTGGCCCCGGCCGTCAGCCA 410011 36 100.0 28 .................................... GATCAGGGGCGGCTTGCTGCGTACTGGC 409947 36 100.0 28 .................................... TGCAGGTCTCGCTCGACACCCAGGTCGC 409883 36 100.0 28 .................................... GTGCGTAGGTTCCGGTGCGGCCGGTGGG 409819 36 100.0 28 .................................... GAGGCAGCGCCCCTGCGGCGGCGCAGCT 409755 36 100.0 28 .................................... TTGGCGTAGATATCACCCAGGTCCGTGA 409691 35 97.2 28 .....................-.............. ACTCAATCGTCGCCCGTGACGGCGCCGC 409628 36 100.0 28 .................................... GGCAGTCCAGGATCCTCTTCGCCCCAGT 409564 36 97.2 28 ...................................T GCCTCAGGGCTCGCGGGTAGGCCGTGGC 409500 36 94.4 28 .........................C.........T TGGCGGCCCCGGCCTCATGGCGGGCCGA C [409481] 409435 36 83.3 0 ...........G.............C..CC..T.A. | G [409414] ========== ====== ====== ====== ==================================== ============================ ================== 16 36 98.3 28 GAAGTCTACCAAGGGGAAGGGTGACTGATTCCCAGC # Left flank : GTATCATAGTCGCATCCTCAACGACAGATATGGCACCCGCCCCCGTCACGCCAAGCGAACCACCCCGATACCTGGCCAGGACATCAAGGACGACTTCTCGATCATGCGCGGTAGGTCAAGTCGCGCCATGCACACGCGCTAGGGCAAGCCCACCGACGACGTCCTGACAATTCCCCTTGGAACCGATCCTCCCATCTAAGGTTATGACCCCCATGAGAGCGATCGTCCACGACCCGCTCAATCGCAAGGAGCCACTGGCACCGCCTGGCAGCATCAAACCACCCATCTGACACTGCGGCATAGAACCTAGCCATCTAGAGCGCGCAGCATGACCTCAATACCATGAAGGCTCTACCTCGTCACCGAGCAGGAGAGTACCCGGAAGAGCCCTGACTGCCTGACGATCCCCGGGCGAGGCAGAGAGGAGGCCCCACAGCTCTCGTTTTTTCGACGTCGAACCCTGACCTTTCGTTGATGTCTTCCCCCTGGTAGGCTGTGAA # Right flank : GGGAGGACGCCGATGGCGCTCGTCGTGTGAAACCAGCCAATTGAAGGATGGGGTAGTCTCGTCGCCGGCTTAACAGATGTCCACGACGCTAAATCCCACCCACGGAAAACATCTTTGAACTATGATCGACTATGAAGCAACCACAGGTCTAGGACACGGTAACACGCGTCAAAACTGCATCGGGGGCATCCAGACACGCGCACCCGCCTTCTTTGCGCCCCCCATCACACCTTCTTCCCTACCTTAACTTAAACTATCAACAGCAATAAAACAAAGAGAATAAACGCGGGCCCGGCACCCACATAAGTCACGAATCATCAACTACCGCCATCCAAAACTTGGATCACCCCAGACGAAAGAAAGCAGTTCCAGGGAACCGCGGGGTCACCAGTTAAGCGAGAAAAAGATCAGTGACGTGCAGCCTATTAAGGTTGACTTGATCGACGGCACTGACCAGCGAGAAGCACGCCAACACAAAGAGAGAGGCAGGTTCTGGGCGG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTACCAAGGGGAAGGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 1620031-1626649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032514.1 Actinomyces lilanjuaniae strain 2129 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1620031 29 96.6 32 ............................A CCAGCGCTCCTCCCGCTTCTCGCCCTGCGTAC 1620092 29 96.6 32 ............................C CGTGCCGCTGCACGCGGCCGCGCCCTCCCCCT 1620153 29 100.0 32 ............................. CATTGTACCGGGTGCGGGCCTCAGCCTCGGGG 1620214 29 100.0 32 ............................. CCGTCCCCATCGTGTTCACGACACTGGAGACC 1620275 29 100.0 32 ............................. TGACCCTTCCCCGGGATCTCCATGAACGCGGG 1620336 29 96.6 32 ............................C AACGGCATCGTCGTGCACGTCACAGTGGACTA 1620397 29 100.0 32 ............................. ATTCGCGGCAATAACCGTACCGAGACCAACCA 1620458 29 96.6 32 ............................A GTGGGAGACCGTGGCGAGGCGGGCGCGCATGA 1620519 29 100.0 32 ............................. ATCCTGCTGGATGCTCCCGCGCTCCTGCGGTG 1620580 29 100.0 32 ............................. GTGTACACCCCTGAGCCCGAGGTCGACACCCT 1620641 29 96.6 32 ............................C CAGGCCGGTCCCAGCGAGGACCAGGACAGCCG 1620702 29 100.0 32 ............................. AGCTTTTTGCCATCGCGGAAGTCCTCGGCACC 1620763 29 100.0 32 ............................. AAGTGCGTGTACTGCGGACACAACACTTTTAT 1620824 29 96.6 32 ............................C CAACAGGGGTAGCCCATCACAACGATAAGGAA 1620885 29 100.0 32 ............................. AAGTAGTTGGTGGACAGAGAGGCGGGGTTCCA 1620946 29 100.0 32 ............................. CAGGATATAGTCGGCAGTGATATTCAGCGTGT 1621007 29 96.6 32 ............................C TGAATTCGTGGCTTTGTGATGAGCAGGTTCGG 1621068 29 96.6 32 ............................T AGGCACCATACTTCTGGGCATACCAACGGCCG 1621129 29 96.6 32 ............................C GTGCCGCCCAGCAGATGACAGTGGACTCCCTG 1621190 29 96.6 32 ............................T GATATTGCGGACCTGGATATCGAGGACAGGCT 1621251 29 96.6 32 ............................C ACGGCTCGCCTCTGTTCTCATACGCCCGATCA 1621312 29 96.6 32 ............................C GAAAAGTCCGTACGCAGGATGTGGTGTCCTAG 1621373 29 100.0 32 ............................. GCGGCTGAGCAGCAGCATGCGGACTGTGAGAA 1621434 29 96.6 32 ............................C TTTCAAGCCGGGCCTCGTTCTCGTTAGCGATA 1621495 29 96.6 32 ............................C GCCCGATGGGGCCTCAACGTCTGGTGCTCTTG 1621556 29 96.6 32 ............................C CCATGCGTTGGCGGGGTCGTTGCAGTCAATCT 1621617 29 96.6 32 ............................C GTGCGCCTCAGCCACAACAAGGCCACTGCTGG 1621678 29 96.6 32 ............................C ACTGTCCGAATCTGTGGGAGAGGGCGTGGCGG 1621739 29 96.6 32 ............................C AACGGATGTGAATCACCAACCTTCGTCCCATA 1621800 29 100.0 32 ............................. GAGAAGAAGCTGGAGGAGTGGTTTAAGAAGCG 1621861 29 96.6 32 ............................C CACGTCACGGTATGCGGCATCCCACCTCACAC 1621922 29 96.6 32 ............................T TAGAGATAGGTTCCTTGAGGTCTACCGGAGGG 1621983 29 100.0 32 ............................. CGCGGACTGTTCCAGCCTGTGTGCTCACTGTT 1622044 29 100.0 32 ............................. CAGTATGCTGAGCTCCAGCCTGATGGTACACT 1622105 29 96.6 32 ............................A CAGCAAGCACTATGGCGCGGATCCTGACCTCG 1622166 29 100.0 32 ............................. TCCACCCGCCACGGTACGCGTTACGCACCTCA 1622227 29 96.6 32 ............................C TCCTCGAAGTGATGCCGCGCCTGGTGGACCGG 1622288 29 100.0 32 ............................. GTTACTGGGCTTTATGCTGATCTCCCCTCCGA 1622349 29 100.0 32 ............................. CATAAAAGGAGCACAAAGAATGCCTAGAACGC 1622410 29 96.6 32 ............................C GGACCGCCGCGCACCACCGCAGCCCCGCAGGC 1622471 29 100.0 33 ............................. ACTCCGGACCTAGCTGCCTTTTCATCCGCAGGA 1622533 29 100.0 32 ............................. TACACAGCACTACACGTGAAGAACGTTCAGAG 1622594 29 96.6 32 ............................C GTGCCGCCCAGCAGATGACAGTGGACTCCCTG 1622655 29 100.0 32 ............................. CACGGGTCACAGAACGCAGTCGGTCACCCCAC 1622716 29 96.6 32 ............................T CGCCTTCAGACCACTGTCGTGCCGCGCGGGAC 1622777 29 96.6 32 ............................C TCGGGGTCGACGGCGGCGGGAGGCGAGCCACG 1622838 29 100.0 32 ............................. GAAGATCTCGTGGTGGAGGCTCAGAACGTCAC 1622899 28 96.6 32 .................-........... GTTCATGATCACCGCTGCTGATGACGACAGTG 1622959 29 100.0 32 ............................. GAGATCGCGAAAGCTATCCCCGGTAAAATCAT 1623020 28 93.1 32 .................-..........A TGTCCCCAGACACACCGCAGCGACGTTCCAGT 1623080 29 96.6 33 ............................C GCGGCCGCCGAGGAGATGGCCGCCCGCGCCGGG 1623142 28 96.6 32 .....-....................... GAACCGGAATGTCCGTGATTAATCAAAATGTC 1623202 29 96.6 32 ............................C CACTATCTGAGCCCACCTGTCGCGCTGTCCCA 1623263 29 96.6 32 ............................T CACCAGAGGGTTCGGCGACGTGTTCACCGCAG 1623324 29 100.0 32 ............................. TCCCGCCAGCCCGACCGAAAATTCCCGTGATA 1623385 29 96.6 32 ............................C CAGCGCCTTAACACGTTCAAGGTGTTTCTTGA 1623446 29 100.0 32 ............................. CGCACGAGTAGGTGAGCGCGGAGTCCACAAGT 1623507 29 96.6 32 ............................T TAGGTGACGGACCGTATATCACGGTCTACGTG 1623568 29 100.0 32 ............................. CGCACGAGTAGGTGAGCGCGGAGTCCACAAGT 1623629 29 96.6 32 ............................A GCCGCCGGTGGCCGATGGTGGGGACGACGTGC 1623690 28 96.6 32 .................-........... CACAGGAGTAGGTGAGCGCGGAGTCCACAAGT 1623750 29 96.6 32 ............................C GAGTCCCGACGAGACCAGGGGGTGAGTCGTGG 1623811 29 100.0 32 ............................. CTGGGGTAGGGGCTGTCCGGGTCGGCGGCCTG 1623872 29 96.6 32 ............................T GACGGACACCACTAACGTCGCTCCTGCCGCCG 1623933 29 96.6 33 ............................C CGCTCCCGGTTAGCCATCTTGGTGGCCGTTTTT 1623995 29 96.6 32 ............................C GAATCCGGACCGAGCTGCCTCTTCATGCGCAG 1624056 29 96.6 32 ............................C ACCTCCAACCATGAGGCCCAGAGCCAGGAGGA 1624117 29 100.0 32 ............................. CCACGCAGGGCCACAGTGGCACCCGTGGCCGC 1624178 29 100.0 32 ............................. GAGGATCTGGTGGTGGAGGCGCAGAACGTCAC 1624239 29 100.0 32 ............................. GCATTGTACCGGGTGCGGGCCTCCGCCTCGGG 1624300 29 100.0 32 ............................. GCATTGTACCGGGTGCGGGCCTCCGCCTCGGG 1624361 29 100.0 32 ............................. GTCGAAGACATCCGGGTGCTCGCCTCGGCACA 1624422 29 96.6 32 ............................C CAGAGAAAAGGAGACGGCCGAAAACACGCACC 1624483 29 100.0 32 ............................. TCGGAGGCGGAGAAGCAGGCGGAGGCTTTCGC 1624544 29 100.0 32 ............................. GAGCGCCGCCACCCACCGGCTGGCGTCCTGCT 1624605 29 96.6 32 ............................T GATCCATCGCGCTCGCAGCAACGGACTCGACA 1624666 29 100.0 32 ............................. CAGTCGCTCTACCCATGAGTGGAGCACTGTGG 1624727 29 96.6 32 ............................C TCAGTGGTTTCCCCGGTGGCGAGCAGCCATGC 1624788 29 96.6 32 ............................C AATATGAGGATTCCCGACTCTGTGTACATTTC 1624849 29 100.0 32 ............................. CCTTCTCACCCGGCCACCGGTCATAGTCGCCA 1624910 29 96.6 32 ............................C AAGGCCGGTCGGGTTGACTACGTGGGCACTCT 1624971 29 100.0 32 ............................. TGTCAGGCGGTCACAATCAGCACAAGCCAGGC 1625032 29 96.6 32 ............................C CTCCGCACACAGCATCAGCACCAGCTCACCCA 1625093 29 100.0 32 ............................. GGCGGACCATCCTCCCTTGACCAGTGCCGTCG 1625154 29 96.6 32 ............................C CGGGGCGCGTGCCAGGGTGTCCCGGTGATGGG 1625215 29 96.6 32 ............................C TCCTGGAGGTGCTGCCTCGCCTGGTGGACCGG 1625276 29 96.6 32 ............................C GACGTTCTCGACCTCATGCAGATGGTCTGGGA 1625337 29 96.6 32 ............................C TGCTCCTACTCGCTGTCGCAGCAGAGCTAGGC 1625398 29 96.6 32 ............................C CGCGCCCAGGGAGGGGAGTCATAGGTCAGCCA 1625459 29 96.6 32 ............................C CGGCATCAATGCCACCCTCGCAGCCGAGATCC 1625520 29 100.0 32 ............................. CGCCTGTCTGTCTATATCGACCCGGCGCTGCG 1625581 29 100.0 32 ............................. ATCGTCGCAGCGCTGAACGCCCACCACGGCCC 1625642 29 96.6 32 ............................C CACCCCGTGGCAATTCCCAGACTAACCCCCAC 1625703 29 100.0 32 ............................. TCGAACTCAGGCCGGGGAGGCTCCGGATTCTC 1625764 29 100.0 32 ............................. CCTGCCATCCTCGCGGGCAGGTGCATTTCCGG 1625825 29 100.0 32 ............................. ATCACGTTCGCCCTGATGGCCGCTGCCACTCT 1625886 29 96.6 33 ............................T CAGGCCCCTCGTCTTCCTCGGGGTCTGATTGTC 1625948 29 96.6 32 ............................C AGGTCTCGTGAGTCGGGTCCGGCGGCGTCACC 1626009 29 100.0 32 ............................. AGGTACCTGGCCAGCCTGTGCGCCTGCCAGAT 1626070 29 96.6 32 ............................A GGTCGGTTGACTGTGGTGGTGAGCTGATGCAG 1626131 29 96.6 32 ............................T ATCCTCAGCCGCCCTATCCAAGTCATCACCCA 1626192 29 100.0 32 ............................. TCCCTGAACGCCTCCGACGGGTCCACAGGACG 1626253 29 100.0 32 ............................. TCCCTGAACGCCTCCGACGGGTCCACAGGACG 1626314 29 96.6 32 ............................T TCCCTGAACGCCTCCGACGGGTCCACAGGACG 1626375 29 100.0 32 ............................. ATGCCGACGGAGTCGTGGTCGGAGCCGGTGCC 1626436 29 96.6 31 ............................C GTATCGGTGAGCCGCTCAGAAATGTGCGTGT 1626496 29 96.6 33 .......................A..... GCCATCGTGATGGCCGCCCTGTCTGATGCTCTC 1626558 29 96.6 32 ............................C GCGGCACATGGGGGATACTCTCCACGGGGCCA 1626619 29 93.1 0 .........................A..A | AA [1626640] ========== ====== ====== ====== ============================= ================================= ================== 109 29 98.0 32 GTGTTCCCCGCATACGCGGGGATGAGCCG # Left flank : CCGGACATAGGTGACCTGGTGCTGTGGTCCGAGCTGGGCACGGTAAGCAGTGGCGTCAACTACGCGGAGGCCGAGCAGGAATGATGACCTTAGTCCTTAGTGCCTGCCCGGCAGGACTTCGAGGCGACTTGACCAAGTGGCTGCTGGAGATCAGTCCGGGTGTGTTCGTCGGGCAGGTGAGTGCTCGCGTGCGTGACCTGCTGTGGGAAAGGACTGTGGCGCTGTGCAAGGACGGTCGGGCTCTGCTGATCTTCAGCGCGGCCACGGAACAGGGGTTTGCCTACCGGACCCACAACCACGAGTGGGAACCGGTGGACTGCGATGGGGTGCTGTTGCTTCGCAGGCCGCTCCAGCCGAAGAGGCAGGTAAGACGCACGGGCTGGAGTACTGCCCGAGCCCAGCAGCGCTCTCGGCGCCCGCGGTGGGCAGCACCACGTCCCGACGCAACCAAGTCGTACCAGAACGAGCCGGATCCAGGGTAAACTCGCAGGTCAGGAAGT # Right flank : AAGCGCCCATATGGTGGGTGGGAACAACGGCCTCCGAGCATCTACGCGCACCCGTCGGCTACGAGCATCCACCCACTACCAGGCGATTGGCAGACTGCGCGGCCACATAGGCCATGCGCTGCATAACTCTCCGAAGCAGTACCCTTAACAGCAGCTCACGGGTCACGACACAGAACGCTGTAAAAAATGCCTCGCTCAGATCCGGGTGCCAGAAGGAACAATCCCCGGCGACCCCTCCTCCCTCACCACGGCGTCCCCGGTCGCTACCACGTCAGCACCGAACGTCCAGTCGCCCTCCACGGTCAGCGAACTCGCCCCGCGCACAGAGGGGACACCCTCAGGGAAGCGTGCCTCGAAGTCCCGGATGGTCTTGTAGTAACGAGGGTCCAGCACCACCGTGCAGGCCTCCTGCGGCACCTGCACCAGCAGGCCGTCCTCGTCAACCTCGTAGACGTCAGAGCGCAGCAGGAACAGGTCGTTGGTAGTCTTGACTGGGAGGA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //