Array 1 234828-235259 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQU01000005.1 Dolosigranulum pigrum strain KPL1932_CDC4420-98 NODE_5_length_235121_cov_88.567642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 234828 36 100.0 30 .................................... TGCTGGTGATTGATGAGGCACAGGAGTACA 234894 36 100.0 30 .................................... TTAGGCAAAGGTATCATCTACGCTGGGGAT 234960 36 100.0 30 .................................... CGAAAGAGCGTAACATTTTGACGGACAAAA 235026 36 100.0 30 .................................... AACGAACAAACGCAAACGCTGGTAGACATG 235092 36 100.0 30 .................................... TCATGTACAAGACTTGTGCTTGTGAACCCA 235158 36 100.0 30 .................................... GAAACCGTGTGCCAAGTTCATCTGGAAAGA 235224 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : TGACTAATCAAATTACTGAACTGATTAATGCAGAGGTACTGAATCATGAATTGGATTTAGAACTTGATGAAATTACAATCCAGGAAGTACTCATCGCTTTAGGAGTGAAGATAGAAGTTGATACAGATACATTATTTGAAAAGGTGTTGGAAATTTTTCAAGTCTTTAAATATTTGCGAAATAAAAGGTTACTAATACTTGTAAATGCAGCTTCATACTTTACAACCGAGGAGCTTAATGAAATGGCACAGTTTGTTTCATTGTTACAGATGAATGTGCTGATGATCGAACCAAAACCGACTGATGCCAATATTACACAATATATCCTGGATTCGGACTTCTTTTTAACCATCAAACATGGTAAAATGAAGTAGAAGATAAACTAGAAAAATAGGAGTCGTTCAAAGCTGAAGTTTTGCATGGACGAATAGCGCGATTACGAAATTTTGTGCAAATTTCTTTAAAAAAAATGATTTTTTAGAAAAGAAATACTGTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQU01000046.1 Dolosigranulum pigrum strain KPL1932_CDC4420-98 NODE_72_length_54833_cov_77.741180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 .................................... TCTTTCAATCGGTCACTTTCATCTGTTGGC 74 36 100.0 30 .................................... TTGTTGCTTCTCGAATGCTTCGTCGGCTTT 140 36 100.0 29 .................................... GAAAAGCAAGGGGGTGAAGCGATGAGACA 205 36 100.0 30 .................................... GATCACTTTCTTCAATCGTTGCTTGGTAAA 271 36 88.9 0 .........T....................T...TT | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.8 30 GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Left flank : ACTTGCTG # Right flank : TGATTGGTCAGATAACTTATGAGATTTAGAGTTATAGTGTATTGATTTTTGATGTAATAATTATTGAAACATATAATCCTGTTTAATCTTCTAGTCAAACTAGCTATTAAATAGGATTTTTGTTTATTCAGGAGATAAGCTACTTGTGAAGTGTTTCCCGTGACTATTAGTCGAAATTGCAGGGGAAATATGCGATAATGTAGAGCAAGGAGTGATTGCTGTGAGTAAGGAATTGTTAGTATTGATCGGTTACGAAGAGGATGTATTAGAGACGTTTCGAGAGATGGCTAGTGAATATCAGTTGGTGAGTGAGTTTGAAGAAGCTGATTTTTCGAAGGTTGAGATCGTACTGGGTTGGGATGAGCGGTTAGTTGATGTGCTTGAGTCTGGTGAACATCAATTAAAGTGGATTCAATTGCCGACAGCTGGAGTGGATAAGTTGCCACTTGATTTCCTAGCGCAAGAAGGGGTGCGGTTGACTTCAGCGAGCGGGATGCATA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //