Array 1 48427-49431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWZP01000043.1 Escherichia coli strain CVM N33591PS N33591PS_contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48427 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 48488 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 48549 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 48610 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 48671 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 48732 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 48793 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 48854 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 48915 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 48976 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 49037 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 49098 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 49159 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 49220 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 49281 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 49342 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 49403 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATGTAGGGGCAATCGAACGATTCTCTGCCGACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 101218-100333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWZP01000055.1 Escherichia coli strain CVM N33591PS N33591PS_contig_56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101217 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 101155 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 101094 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 101033 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 100972 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 100911 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 100849 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 100788 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 100727 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 100666 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 100605 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 100544 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 100483 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 100422 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 100361 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //