Array 1 124007-125622 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRE01000008.1 Salmonella enterica subsp. enterica serovar Infantis strain NY_FSL S10-1647 NODE_8_length_133050_cov_21.476_ID_4644, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124007 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 124069 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 124130 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 124191 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 124252 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 124313 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 124374 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 124435 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 124496 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 124557 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 124618 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 124679 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 124740 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 124801 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 124862 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 124923 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 124984 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 125045 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 125107 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 125168 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 125229 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 125290 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 125351 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 125412 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 125473 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 125534 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 125595 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8681-10578 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRE01000040.1 Salmonella enterica subsp. enterica serovar Infantis strain NY_FSL S10-1647 NODE_40_length_41030_cov_20.6673_ID_4708, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 8681 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 8742 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 8803 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 8864 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 8926 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 8987 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 9048 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 9109 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 9170 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 9231 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 9292 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 9353 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 9414 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 9475 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 9536 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 9597 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 9658 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 9719 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 9780 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 9841 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 9899 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 9960 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 10021 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 10082 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 10143 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 10204 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 10265 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 10326 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 10427 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 10488 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10549 29 93.1 0 A...........T................ | A [10575] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //