Array 1 16647-17408 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXX01000046.1 Streptococcus uberis strain OLC4459-A1 k127_416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16647 36 100.0 30 .................................... TACAGCTTATCCATTTAGCAAAACAAGAAG 16713 36 100.0 30 .................................... TAATAAATTTGGTTATGAATCTGTCGAAGG 16779 36 100.0 30 .................................... ATTATTATAATTAATTTTAGCTGAAACTTT 16845 36 100.0 30 .................................... TGTCTTTGCTGTTTGGATCAGGAATTTTAA 16911 36 100.0 30 .................................... AGTGAAATGGTAGATGAATTAAGTAAAATA 16977 36 100.0 30 .................................... TAATCTTAGTATTCCTTAGATTATCTGTTC 17043 36 100.0 30 .................................... GATGGAATATATTTATTTTCTAAGATACTT 17109 36 100.0 30 .................................... GATGATTCCAGACCCAATCAGTAATGGTTA 17175 36 100.0 30 .................................... TCTTTATAAATCAAGCGAGTAGAAAAACCA 17241 36 100.0 30 .................................... CAAATCCTAATGCATCGTTTAAATATCTTT 17307 36 100.0 30 .................................... ATCATTACTATCCCAAATTTGAAGCTCCCA 17373 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACAATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTCGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATTTCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATAAAGATTTCTATCTTATGCCGCCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATTAATGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACTTTTTGGAAAAATTCTTCCACGAG # Right flank : CTGTCTCTTATACACATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 3-1161 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXX01000022.1 Streptococcus uberis strain OLC4459-A1 k127_376, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 30 .................................... TTTGCGTCATCACCATTCCGAGAGATTTAA 69 36 100.0 30 .................................... AACAGGTATTGTTCTCTTATAAGTTATACA 135 36 100.0 30 .................................... TTGCGATGAAGGTTATTGGTACTATGTCAT 201 36 100.0 31 .................................... TTTAAAAACCCTATAATAAAGGGATTTCAAA 268 36 100.0 30 .................................... ATCTGTATAGATACTCGTATGGTTGCCCGT 334 36 100.0 30 .................................... AATTTATTAAATTAAGGAGAATATAAAACA 400 36 100.0 30 .................................... GTTTTCCATCTGACAATCCATCAAGTGTCG 466 36 100.0 30 .................................... ATGTCATCAAGCGGTTTTTCTTGAGTATGC 532 36 100.0 30 .................................... CCGAATTGATTAGAAGATACTCTAACTCAG 598 36 100.0 30 .................................... CGCCATTGAAGAATTAAAACCATTACTTAG 664 36 100.0 30 .................................... AGTGTTTATATTCGATGAACAGCGTGTCGT 730 36 100.0 30 .................................... TGTAAGTCACTAATGATTGTGTCTAATTGA 796 36 100.0 30 .................................... TTTGACAGTATAAGCAAGTCTGAAATTGTA 862 36 100.0 30 .................................... TTTCTTTTGGCGTTAAATCCATTGCCGTTT 928 36 100.0 30 .................................... CAGGTTGATTGAGATAACTTTCAAACTTAG 994 36 100.0 30 .................................... GAGCACAAAATAACTGGGATAGTAATGCAA 1060 36 100.0 30 .................................... TTTGCGTCATCACCATTCCGAGAGATTTAA 1126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAG # Right flank : AACAGGTATTGTTCTCTTATAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 480-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXX01000008.1 Streptococcus uberis strain OLC4459-A1 k127_286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 479 36 100.0 30 .................................... GTGAGTTCTTCTTTAGATTCGAAAAATCCA 413 36 100.0 30 .................................... ATGGGAAATCATCAAACAAGTTGTTATGCT 347 36 100.0 30 .................................... CTGGCACACGGCCTATTCCAACAGCGCCGA 281 36 100.0 30 .................................... TTTTCACCTCCTTACTATACTGTTCGAAAT 215 36 100.0 30 .................................... GACAGAGCTATGCTTGAAAATTACTGCACT 149 36 100.0 30 .................................... GTATTTTGTTACGTAGCCCTCGCTATTCAA 83 36 97.2 0 ............G....................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : TCCCAAAACTACATTAACAGATTCACTTGATTCATTGT # Right flank : CGATATCAAACTTAGCTGAGATGTTAAACTGGTTTTAGAGCTATGTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1-960 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXX01000039.1 Streptococcus uberis strain OLC4459-A1 k127_611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... GACAGAGCTATGCTTGAAAATTACTGCACT 67 36 97.2 30 ........T........................... GTATTTTGTTACTTAGCCCTCGCTTTTAAA 133 36 100.0 30 .................................... GATATCAAACTTAGCTGAGATGTTAAACTG 199 36 100.0 30 .................................... ATTAAGCTATGTGTTAATGAGACAGCCCAA 265 36 100.0 30 .................................... AGTATTTTTCTGTGAACCTGCGACTGTGAG 331 36 97.2 30 .........................A.......... TTTGGTATAAGGCTTATCTTCTTCTGACCC 397 36 97.2 30 .........................A.......... CCAATGTGACAGGTACAAACCCAACAGTAA 463 36 100.0 30 .................................... GATGGACACCGAAGAGCACCCAGAATATGC 529 36 100.0 30 .................................... AGGAATGATATGATCAATCGCTGGAGATAA 595 36 100.0 30 .................................... TGATAAAATTTTAAGCCCCGAGAATATCAC 661 36 100.0 30 .................................... AGCTGTTATGCTCTTGTCTGGTGCAGTCGT 727 36 100.0 30 .................................... TCAGCATAAGCTAAGTGAGTATAGCTTGAT 793 36 100.0 30 .................................... CTTTATTAAAATATGTGTTTCTGATGCAGA 859 36 100.0 30 .................................... GCCAGAAAGTGAAGATAGAAATCGAGGAAG 925 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 34-596 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXX01000009.1 Streptococcus uberis strain OLC4459-A1 k127_288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34 36 72.2 30 A.C...A.T....A.C...A.......ATG...... CAGATCGTAGAAAAAGATAACTGAATTGGA 100 36 80.6 30 ..A.................A.G.GT...A..T... GAATTACGGTGGCGACATATCTATTGAAGA 166 36 100.0 30 .................................... GTCACATCACGAATAACAAACATTTCTTTA 232 36 100.0 30 .................................... TTCGTTGTACCACTTAAGCGCTGCATCTCT 298 36 100.0 30 .................................... AACCAACGCCTCTTTCATTTCGACAGATAA 364 36 100.0 30 .................................... ATCACACCGCTCTCACTCAAGTAAGCGACT 430 36 100.0 30 .................................... ATTTAATCATGTCGAAGGTTGTCATTTCAA 496 36 100.0 30 .................................... ATGGAAATAACCACTCAAACTAAGAAAAAA 562 35 83.3 0 ................G....AT....-G......T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 92.9 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAGTACCTGTCTATATTTCAGTAAATAGTCAATA # Right flank : TTACATAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGTTTAAAATGTATAATTATTAATAAAATGGTCTTGAAAATGTATATCAAAAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGATTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGGTGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 544-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXX01000015.1 Streptococcus uberis strain OLC4459-A1 k127_313, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 543 36 100.0 30 .................................... TAAAGGTCGTTAATTGATGAATGCGTTCCT 477 36 100.0 30 .................................... TCCTATTTTTTATTTCTAATATTTGCATTA 411 36 100.0 30 .................................... AATTGCTGAAGATTACCTTGACGAAATTGG 345 36 100.0 30 .................................... AAATATCGGATATCGCTGATATAATTACTT 279 36 100.0 30 .................................... ATCGCTGAAAGGATATTAAATGAGACGCTT 213 36 100.0 30 .................................... TACATTAACAGATTCACTTGATTCATTGTC 147 36 100.0 30 .................................... GTGAGTTCTTCTTTAGTTTCGAAAAATCCA 81 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : TTTAGGTTAGTAACTAAAGTATC # Right flank : CATGGGAAATCATCAAACAAGTTGTTATGCTGTTTTAGAGCTATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //