Array 1 44134-42581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWND01000002.1 Neisseria meningitidis strain Nm320524 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44133 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 44067 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 44001 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 43935 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 43869 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 43803 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43737 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 43671 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 43605 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 43539 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 43473 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 43407 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 43341 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 43275 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 43209 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 43143 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 43078 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 43012 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 42946 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 42880 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 42814 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 42748 36 100.0 30 .................................... TTGCGCATGATGGCAACGATGATTACCATC 42682 36 100.0 30 .................................... CGCCCGCTGCCGCCTAAAAGGCGGCCCGGA 42616 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //