Array 1 109478-108106 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTX01000001.1 Salmonella enterica strain BCW_3299 NODE_1_length_431061_cov_2.41171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109477 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 109416 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 109355 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 109294 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 109233 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 109172 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 109111 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 109050 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 108989 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 108928 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 108867 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 108806 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 108745 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 108684 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 108623 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 108562 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 108501 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 108440 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 108379 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 108318 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 108257 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 108196 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 108135 29 100.0 0 ............................. | A [108108] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127047-126042 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTX01000001.1 Salmonella enterica strain BCW_3299 NODE_1_length_431061_cov_2.41171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127046 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 126985 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 126924 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 126863 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 126802 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 126741 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 126680 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 126618 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 126557 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 126496 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 126435 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 126374 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 126313 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 126252 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 126191 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 126130 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 126069 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //