Array 1 2246-1418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQA010000020.1 Listeria fleischmannii strain FSL L7-1641 NODE_20_length_39341_cov_38.183349, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2245 36 100.0 30 .................................... TGCGGACAGTCTACGTATTATGTGCAATAC 2179 36 100.0 30 .................................... ATGTATACTTACCTAACCCAGATTCACGGA 2113 36 100.0 30 .................................... TTTTGTTCCGTATTTTCCTTCTTTAACCAC 2047 36 100.0 30 .................................... CACTTACATTATCAACAACAATGTTGTCAT 1981 36 100.0 30 .................................... AAAGATTAGCATTTCCTGTGGAAGTGAGTA 1915 36 100.0 30 .................................... GTTGCATTCTCTATTTTCAAACAACTATTG 1849 36 100.0 30 .................................... ACCACCCCAAGCAAACGTATGCGGGACACC 1783 36 100.0 30 .................................... TTGTATGGGGTATTTAACTCCCACATTTTT 1717 36 100.0 30 .................................... AATTTATTAACCATATTAAACAAAGTAATT 1651 36 100.0 30 .................................... TACCATAACTATCCACCATGTTTCTTAGCG 1585 36 100.0 30 .................................... TACTTTCGCCGTGCTTCCCTCTTGTGATGT 1519 36 100.0 30 .................................... ACGAAACTAAGCGAGAAATTGTCACTGTGT 1453 36 88.9 0 .............................AC...TT | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.1 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TAAAAATATTGATGATACACTAAGTTATCAGGAATATGAGGAAGTTATGAATTCCATGAAGCGACTTACCACTAAGCATCCTAACTTCTATTGTATGGTTTTCCCAAGTCAAATCGGATATGTTTACATTAGCGAGGAACATATTGAAAGTATATTAGTTGTAGGAGAAGAGGCACATTCGCTCGCGGATGGTCGTAATTTATATACACGTGTTTGCGCCTATTACCCAGATCAAACTATTCCTAGCTACAACGAATTTTTGGGGAGACTAAAAATGATTGCCCCTTATTTATTTACAAGCAAAAAACAAAGCATTCAAATGAATGTAAAAGAACTGGTTTTAATTAAAATCATTAATGAGCTATTCCAGTACTTTGACCTTATACCAGTAGCAGTATTACAACATAGTCAACTAGAGTATGATTTTTTATATGAAAGCTGATAGATTTTATGATAAACTAAAATAACAGTAGTTTTTAAAAATCTAAAACCAATTTGAG # Right flank : ATTAGATGTGATTGATCCTAATTTGAATAGTTTCATTGTTCTCAGATATTCTTATGATTTCATGTAAATAAAAAATGCTAGAGGCAGACTATTCGCTGCTTCTTTATTGTATCCAAATAACTATGTCTAAATAGAACTAAAGTCTATCCACTGTGTTCAAAAGCCTGATTTTATATAACTTTTTCTCTAATTAACCCCAAAAGTACTATTTTTGTCAGAAAGCTACTTTTTACTTTCTTTTTTTAGATTTACTCATTATATTTAAGTTATTCATCAAGAGTTTCTCTAATTAAGATAAGGGGGGATGTAGAATTCTGAAAAATTAATATCGTGTTTTGCCAAAGGAAGATGGTCGGTTTTTTGTAAATGTTGGGGGGACATAAGCAAATCGCAAAGGCAGGAAAGAAAAACATGAGAAACGCCCTTTCATTGATTTTCATTATTTCGCTTAAGGGATAAGCGATAGGGGGAAAAATGATGGGAAGAAAAAGTAAGGTGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 8170-9658 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARQA010000020.1 Listeria fleischmannii strain FSL L7-1641 NODE_20_length_39341_cov_38.183349, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8170 36 100.0 30 .................................... AAAAAAATTCAACTAGCAGTCAGAAAAGAA 8236 36 100.0 30 .................................... CGGGCTTTCATACGGTATGGCCGTTGGAGC 8302 36 100.0 30 .................................... ACGAATGGTAAATTGTCGGAAAGCTGTCGC 8368 36 100.0 30 .................................... CGAATCCATTTGTTTCACTTGATCCTCTTG 8434 36 100.0 30 .................................... ATATGACTTATACTTACTACTAGTTTTTTC 8500 36 97.2 30 .......................A............ TTTTTCATCTCTATTTCGCTCCTTTTATTC 8566 36 100.0 30 .................................... TTTCGGTCTTTTTTATTACTGACGGTCATT 8632 36 100.0 30 .................................... AAAAAAATTCAACTAGCAGTCAGAAAAGAA 8698 36 100.0 30 .................................... CGGGCTTTCATACGGTATGGCCGTTGGAGC 8764 36 100.0 30 .................................... ACGAATGGTAAATTGTCGGAAAGCTGTCGC 8830 36 100.0 30 .................................... CGAATCCATTTGTTTCACTTGATCCTCTTG 8896 36 100.0 30 .................................... ATATGACTTATACTTACTACTAGTTTTTTC 8962 36 100.0 30 .................................... TTTTTCATCTCTATTTCGCTCCTTTTATTC 9028 36 100.0 30 .................................... CTCCCATTCAAAAATAGCGTTGGATACACC 9094 36 100.0 30 .................................... AGTTAAGTTCGATTTTATGACCCTTATATT 9160 36 100.0 30 .................................... TAAAAAGCCCTTTGCGAGCCCATCGCCATT 9226 36 100.0 30 .................................... AACTTCATCCGTGGTGGTGCAATCACTATT 9292 36 100.0 30 .................................... CCAGTTGGGATTGCAATAATAATTCAAAAG 9358 36 100.0 30 .................................... TTCAAAACTAAATTCACAGAATCCGAAATA 9424 36 100.0 30 .................................... TAACTACCATTTGGCTTCTTGTAACTCACT 9490 36 100.0 30 .................................... TTGGATTTGTTCGGCCGCTCTGGCAATTTC 9556 36 100.0 30 .................................... ATATAGGCTTGCAGAGTATCACTTGTACAT 9622 36 86.1 0 .............................A..TGGA | T [9649] ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.3 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TCTTCTACGACATCATCCAGGTAAGATACACCCCGACGCTTAGCCAAATGTGTCAGTGCTACATAAATCTCTGAAACTTCAAGCTTTTCATTTAGCCCTTTTACTCTCAACTCATAAGGATTTTCGTTCACGATATCACAAATATCCATATCATGCGCCAAAAGTAATTGTTTAATTCTTTCTCTACGATGCTTTTTGCGTCGGCTTAGACGTCTAGATTGGCGGCTTGTCCTTCTGCTTTCATTTTCTGAAGCATCTCGACTACTGAATAACCTTACCCCAGTATCTACGACATCACCATTTTCAGCATCTATAATCCCCCATCCTACAGAAGCCACCCCAATATCCAAACCTAAAACCAATTTTTTCATATGATGTTCCCCTTCCTTTTGTGTACTAATTAAATTATACAGTTTAAAGAGCGATAAAGCTACTATAAAATAGTTTTATGGTATAATAAAACTAAGTAGTTTCTAAATCCTCATTTTGACGAATTTGAG # Right flank : AAATATTATGATTCGCGCCGAGTTTTAACACTCTCAAAATTTTATTTCCCATACGTTTCCTAAAAAATCACAAAACCATTTGCGTCTCCAAAATCTAATTTTGGAGACGCAAATGGTTTTTAGTTTGGCTTGGGTAGCCGCCTGATTAAAATGGCAGTTTGAAATTGCCGAAAGGATTTTTGCCTTTTTTGCCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTAAATTGTTTGAGGAGGCGGTTAACCTCTTGGATTGGGCGTCCGCTGCCTCTTGCAATTCGTTTTCTGCGGCTGGCGTTGATAATATCAGGATTGTCTTTTTCATTTTTAGTCATGGATTTAATGATGGCTTCGATATGTCCAAGTTGTTTATCGTCGACTTGCATATTATCGAGGCCTTTCATTTTGCCGGCGCCAGGTAGCATCTTCAGTAGCTCATCAAGCGGGCCCATTTGCTTCACTTGACCAAGTTGTTCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //