Array 1 3351538-3351082 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFYB01000001.1 Cronobacter sakazakii strain NCTC9238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3351537 29 100.0 32 ............................. AGCAGTCAACAACGCTTCAGCAGTTGCTAAGC 3351476 29 100.0 32 ............................. ATAACGTGCGTGATGCTTTCCCCGATCTGCAT 3351415 29 100.0 32 ............................. TGAGGTAAAAACTTATGCTCCTGAATTTCAGG 3351354 29 100.0 32 ............................. AACTCACGAACAAAATTGGCGAACAGGGCAAT 3351293 29 100.0 32 ............................. AGATCGTGAGGTGAGAAATTATCGTGCGGGCG 3351232 29 100.0 32 ............................. ATTTGCTCGTGTGTCATTGGCTTGGGCGTCAG 3351171 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 3351110 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3379185-3377935 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFYB01000001.1 Cronobacter sakazakii strain NCTC9238, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3379184 29 96.6 32 .C........................... TGAAAAAAAACCGGCTTAAAGCCGGTTTATTT 3379123 29 96.6 32 .C........................... CGGCCGAGCTGGGAGGAACGGCCCGCCTGTTT 3379062 29 100.0 32 ............................. TCCACGCAAACAGCCGGGGCCGGCGTCTGGTT 3379001 29 100.0 32 ............................. AGCAAACCACTCGGCAGCTACTCGGCGGGCAA 3378940 29 100.0 32 ............................. GGATCTGGTCAATTCAATTAAGGCGCAGGCCG 3378879 29 100.0 32 ............................. CTCAGATGACGCGAGAATTTCGCGACGGAAGA 3378818 29 100.0 32 ............................. TTATCAACGTGTTTACTCAACTGGCGCGCACA 3378757 29 96.6 32 .C........................... TTTACCAGCAAAAGCCTTGTGAGGAGACTGAT 3378696 29 96.6 32 .C........................... CTTGCCCTTGTCAATTTCACGCCCTGCCATCT 3378635 29 96.6 32 .C........................... CCGTGGATGCCTCAGTCAAGGTTCCGCTGTCC 3378574 29 96.6 32 .C........................... GTGGAGCGCAGCAGCACCGACCCAAACCGCGT 3378513 29 100.0 32 ............................. CCTACGGTGCGACGCCGTATTTATTCAAAACA 3378452 29 100.0 32 ............................. GCCGCGCCGTATTAACGTACCTGCAATGATTC 3378391 29 100.0 32 ............................. TAGGCGTTTCAATTGGCATTTTTCTCACCCTC 3378330 29 100.0 32 ............................. CCGCCGCAGCCGCCGCACAATCAGCTGCTGCC 3378269 29 100.0 33 ............................. CCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 3378207 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 3378147 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 3378086 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 3378025 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 3377964 29 79.3 0 .C...........C...A..A....C..T | T [3377937] ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCACAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //