Array 1 1849799-1851476 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKP01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03463 2014LSAL03463_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1849799 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1849860 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1849921 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1849982 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1850043 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1850104 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1850165 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1850226 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1850287 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1850348 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1850409 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1850470 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1850531 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1850593 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1850654 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1850715 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1850776 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1850837 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1850899 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1850960 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1851021 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1851083 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1851144 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1851205 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1851266 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1851327 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1851388 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1851449 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1867735-1869716 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCKP01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03463 2014LSAL03463_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1867735 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1867796 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1867857 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1867918 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1867979 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1868040 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1868101 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1868162 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1868223 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1868284 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1868345 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1868406 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1868467 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1868528 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1868589 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1868650 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1868711 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1868772 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1868833 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1868894 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1868955 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1869016 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1869077 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1869138 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1869199 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1869260 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1869321 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1869382 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1869443 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1869504 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1869565 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1869626 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1869687 29 96.6 0 A............................ | A [1869713] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //