Array 1 292533-293580 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLOB01000004.1 Marinomonas spartinae strain CECT 8886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 292533 28 100.0 32 ............................ AAATGGATTGTAAGAGGATCTATCCATATTGA 292593 28 100.0 32 ............................ AGCTTCTTAACATAAGCTAAATGCTCTAATGA 292653 28 100.0 32 ............................ CATGCCGTTAGGTGTTGATACGTCAATACGAC 292713 28 100.0 32 ............................ TAAACTATTCATTCATTGGGACAAGTCTGATT 292773 28 100.0 32 ............................ TTAGTAGCTTACACTCATTGATCTAGAATGCA 292833 28 100.0 32 ............................ CGAGACACTAGCAACAAAACAAGTTAATGTTG 292893 28 100.0 32 ............................ ATTGAATAGTTGTGTTAGTTGTGGCATATATT 292953 28 100.0 32 ............................ AATAGCAGGGTAAGGAGTTAGGGACGCTTAGA 293013 28 100.0 32 ............................ TGTTGTAACCCATCTTTAAAATTAACTTTCAT 293073 28 100.0 32 ............................ TGAGGCATTAAAGTCAGTACCAGTTGATAAAC 293133 28 100.0 32 ............................ AGCCCGACAATAGGGTGTGTAGGCTCCCACTC 293193 28 100.0 32 ............................ TTTGAAAGCTACGATTAAATCATCAATGACAA 293253 28 100.0 32 ............................ AAATAAAACTTTAACGGAACCACTAAAAGAAC 293313 28 100.0 32 ............................ TGACGCACTTGCGCCGCATCCAGTGACGTGAT 293373 28 100.0 32 ............................ GCACTAAAAGACGCGTTTTTCATGGGGTCACT 293433 28 100.0 32 ............................ AGCTGCAAAAAGCTCTTTGCTGGTATTGAAGC 293493 28 100.0 32 ............................ ATCATGAAAGTAAAATCATTTCTTATTGTGAG 293553 28 92.9 0 ............G..C............ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : CAACGGCTTCCTTAGGAGATAAAATGCCAAATAAACTGAGCAAGGTCAGCGCTCCCATCATCACAATGTGAGGGCCAATGCGTGAGACGATCAACGTACTTAAAACAATAATGGTAAGAGTTAACGAAAACCAACCGTCCCAACCCATATAAGCTCCTAGTTTGATGGCAAAGAAAAGAATCGGATAAAAGGCATTCTAGAGGGTGTTTTAAGAATTAAAAGAAATAAAAAATGATTTGTATATTCTTATATTGAATATAGGTTTGAATTATATAAAAAAAGTGTGAACATTTATTATCCCACTCAAAAACAGCAAAGAAAGACTGGCTAACTCTTCCCCAATTGGATTAACCTTAATTATATCGCTTGACCCTTTTTTTGAACCTCAACGCTAAGTCCAGAGAAATAGGGGCTTCGCAAAGCTCATTAAAAAAAGGGTATTTTTATCGAAAAACCATAAAGCTCTTTTACAATCAAACACTTAATGGTATTTTGGCATA # Right flank : AAGCCCCAACTTGCCAGCGGATATCGGGGGTGGTGATAGGGCGACAGATGGCGCCTTGTTCGTTGGCTTGTTGGCGGCACAGGGCGGGCACGACGGCGACGCCTTTGCTGACTATGCGTCCCACGGTGGTGAGGTGGTGCGCGTCGAAGGCGGCATTACTCTACTTGTCCTTCTATCAAACGGCCTTCTTCCTCGGGAATATCTTCCAGTGTGATGCTTTGCATAATGCGTTCTTGCGCTTGTAGGGCATGCTTTTTCCATTTGTTATGTTTATCAGAACGATCTACACGGTGATCAAATTCTGCTTCTAGAAAACAATGCTCACTTAATGGAAGGCAGTAATAATCTTGAAATGAGCGGCGGTTATAGCGCCATTCATGATAAAACACCCAGGTTCGATTGTTTATCTCTATTTGTTTGGCGGGATCAAGGGGGGGGTAGCCCCTGTTGGCTAGTGCATACCCTAACTGTTCTGCTTCATAGTTCTCAAATTCCTTTTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 285009-287978 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLOB01000002.1 Marinomonas spartinae strain CECT 8886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 285009 27 100.0 33 ........................... TGTTTGCTTCCTCAATGTTGCAATAAGTTCTTG 285069 27 100.0 33 ........................... TGTAACGCCTTGGCAGATGTACAAGGCTCAGCG 285129 27 100.0 33 ........................... ACAAAAGCATTATCAAATCGTGATACACCAAGG 285189 27 100.0 33 ........................... AAAAACGATGTCACGAATTACAGTCTTCAGGGG 285249 27 100.0 33 ........................... AAAAACGGCTTGATGGGGTGTCATATCAATCAG 285309 27 100.0 33 ........................... TGAAAGTCTTTCTGAAAACCACTGAGTGTCTTG 285369 27 100.0 33 ........................... ACCAAGAAAGACCAGGCGAAAGAGGTGTGGAAG 285429 27 100.0 33 ........................... CAGATAAAGTAAAGGATGTGTTTGATGAGTAAG 285489 27 100.0 33 ........................... AGAGCCAGAGGAACCAACAAAGAGCGCATGTTG 285549 27 100.0 33 ........................... AAATACACCGCGTCTTTTTTGCGCTCTTGGCGG 285609 27 100.0 33 ........................... ATACGACGAAACCTTCTATTTATCGCATGTACG 285669 27 100.0 33 ........................... GGATATAACTTCATTCTCGTTTAGCAAATAAAG 285729 27 100.0 33 ........................... ATTTTGGTAAATTCGTCTTCGATGAGTATGTTG 285789 27 100.0 33 ........................... TCATCAATGACAGTAAGCCCCAGCCCACTAACG 285849 27 100.0 33 ........................... ATCTCCTGAACCATTACCGATGAGATCTGATAG 285909 27 100.0 33 ........................... AGTTAAAAAAAGACCTGCAAAATCTAAAAAATG 285969 27 100.0 33 ........................... GCCAAGCACTGAGCGTTCAGCCGAGATTGAATG 286029 27 100.0 33 ........................... TAATACCGCAAGCCATGAAAGGCAAGCCAGCTG 286089 27 100.0 33 ........................... GATTGATTCTAAATTTCCATCTCGCGACAGCCG 286149 27 100.0 33 ........................... TATCTCGAAAGTATGGTAGCGGTGAACCAGTAG 286209 27 100.0 33 ........................... TTTAGGGGAAAACTTATGGCGCGCTATTTGTCG 286269 27 100.0 33 ........................... AAGAGATTGAAAAGCTCAACTTCTGGCTCAAAG 286329 27 100.0 34 ........................... AGTTTGCGGATGATGGCGTATTCCAAACCCACTG 286390 27 100.0 33 ........................... TAATAACCCCAAAAATGGTAGAGACCGTATTTG 286450 27 96.3 33 ..................A........ CAACGCTCAACAACGTCGAAAACTACACCAACG 286510 27 100.0 33 ........................... CGTTGGACTTTGCAACAGCAGAGGGCCAGCCTG 286570 27 100.0 33 ........................... AGTAGCGGGGCTCACAGAAAGCGTTAATCTTCG 286630 27 100.0 33 ........................... CTGTGGCGTTTTGACTGTCACGTAAGCTCCGAG 286690 27 100.0 33 ........................... AATAAGCGCAAATGTTACGCTTATTGGTAATTG 286750 27 96.3 33 ........................G.. TGGCGCAGTAATTGACCGTCTTTTTATCGAATG 286810 27 100.0 33 ........................... ACATCCCGATATTCGTCATCACGATAAGCACGG 286870 27 100.0 33 ........................... CTTACGCGGTTGTAGAAATGAAAAGTTTAGACG 286930 27 100.0 33 ........................... AATAAAATCCAGCGCCTCAGCCATGCCCAACTG 286990 27 100.0 33 ........................... GACCACGCGAACCAGCGAGAGTTTGATGTGTTG 287050 27 92.6 34 ...........A..G............ AAGAAGCTCATTACTTCTTCAGGTTTACTCATTC 287111 27 85.2 33 ..CA.......A..G............ TTGCTCCGCTCCCCAGCAAATACAGACAAAAGC 287171 27 85.2 33 ..CA.......A..G............ TAGGCTATTAGGATTAATCACCCCTTGCATCTC 287231 27 85.2 33 ..CA.......A..G............ AGCATTCAAAACCATGTGTTAGAACTGATGAAC 287291 27 81.5 33 ..CA.T.....A..G............ TTTGTTGATGGACTCAAGATAATCACCTTCTTC 287351 27 85.2 33 ..CA.......A..G............ AGCAGTGTTCCACCTTGCCCCATCTTCAAAGCC 287411 27 85.2 33 ..CA.......A..G............ GAGGAGGATGTTAGGCGTAATCGTGAAATGATC 287471 27 85.2 33 ..CA.......A..G............ GCGAGCGGGTATGGTCGTTTCTTGCAATGGTTC 287531 27 85.2 33 ..CA.......A..G............ TTGTGGCTGATTGAATCCACCTTGCTGTTGCCC 287591 27 85.2 34 ..CA.......A..G............ ATGCGTTTGTGCGCAAGTTTAGATCTGGCGCAAC 287652 27 85.2 33 ..CA.......A..G............ ATAGTCGGTCGCCAACAGCGCCAAAGCCTTGGC 287712 27 85.2 33 ..CA.......A..G............ GAGACAGCGCGCCATTTTTTAGATTAGGTCAAC 287772 27 85.2 33 ..CA.......A..G............ TAATGGTGACACGGTGGGGGATTTCATGTTGCC 287832 27 85.2 33 ..CA.......A..G............ TGAAATTTCACTTGCGGCATATGCAAGGCTTCC 287892 27 85.2 33 ..CA.......A..G............ GAATACCACCGCACCGATGCGGCGGCTCATTTC 287952 27 92.6 0 ..CA....................... | ========== ====== ====== ====== =========================== ================================== ================== 50 27 95.3 33 TTTGCCGCCGAGCACGCGGCTTAGAAA # Left flank : CAACTTAACCTAGTCAAATGGTTAGATCGTCTAACTGACTATGTACATATAAAAAGCGTTGCAGAGGTGCCAGATAATGTGCAGGGTTATGAAACCTTTAATCGTCGTTGTAAATCTGGCTCACCAGACAAGCATATTAGAAGGCGAATGAAACGTCATAATGAAACATGGGAACAAGCGGCAGAATTTTTTAAAGGCTACAACATGGAAAAAGCCGATAAAGATCTGCCTTTTATTCGAATGAAAAGCCTACATAGTGATAACGAGTTTTGTATGAGCATCACTAGAAAAGAAGCTGAGTTGTCCAATAAACACGTTATGTTTAACACCTACGGACTGAGTGCAGAAGGTGTTTTACCCAAGTTTTAACCAATAAAATTTGCTCTTTAAAAAAATACTTTAAAAACAGAAAGTTACAACATGCAGAAAAAACATTGGTAAAAACGTCTATTTTTACCTAACGGCATGTTGTAACTTGTTTTTTTGCAACTAGACTATTG # Right flank : AAACGGGTCTAGATTAACGTTGCGAAGTTCCGTATGATTTTGGCCTGCCTATGGAAGAGGGATCATATTATGACTTGGAAACACTCAGGGAAAGTTGAGGCATTTGACGAGATTGGCTTAGATCAGCAGATGGCACAGCAGTATGGTTTGGCATATAACCCTGCAGATCTGATGAGTGCGCGTATTTTTATTTCTCGTCAAGCGCTTGCTATGCTAGCAAGCCTTAACCATTTCGATCAGCAAAAAGTGATCAAAGAAATCGCTTTTGTCTGTAATAACCCCAATAGTTGCAGCTCCACTAAGCACAGCTTAATGCCATTTAAGCGCTTCTATCGTACAAAAGATCAGTTTCGTTCTTATCATTACCTAATTGACTTTAAAATCACGAAAAATGATCAAGTAGTTATTCATGATATCTATCTTGATCAAACGCTTGTTGGTCCAAAGTCGAGACACCGTTTAGAACGTAATATGCTTTACAATGTTAAACGAATAGGTGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGCCGCCGAGCACGCGGCTTAGAAA # Alternate repeat : TTCACCGCCGAACAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 674245-675473 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLOB01000002.1 Marinomonas spartinae strain CECT 8886, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 674245 28 100.0 32 ............................ GCTGAGAATGGTAAGAAGTTCTAGAAATAAAA 674305 28 100.0 32 ............................ ATCACAACCTTGTATCTTATTCCGAAGTATTT 674365 28 100.0 32 ............................ TTGTAGATGTCATGTATAGTGTTCCCTTGTAT 674425 28 100.0 32 ............................ TTGCTTGGCACCCATTCTCAAAATAAATTGAT 674485 28 100.0 32 ............................ TAATGGGTCAGGTCCATCATCATATATTTCAA 674545 28 100.0 32 ............................ GACAAAATTGAACCTCATTTCTCCCCAGCGAA 674605 28 100.0 32 ............................ AATCTGGCGGAGCTTAGTTTTTTTCTCTGTCC 674665 28 100.0 32 ............................ AGAGTTGTTCGCAGGTATCAGACTGTCGAATG 674725 28 100.0 32 ............................ GATGATGTACAGGTTTTTGACGTTGTTTTGCG 674785 28 100.0 32 ............................ CAACAAGCCACGAGACCGCCGTGTCTTGCGAG 674845 28 100.0 32 ............................ ATAGTAAACGGTATTGATAACCTAGAAATCAG 674905 28 100.0 32 ............................ GCGATGGGCACCTGTTGTTTTTAGCAAGACGC 674965 28 100.0 32 ............................ GCGATGGGCACCTGTTGTTTTTAGCAAGACGC 675025 28 100.0 32 ............................ AAGACGCTCTTGAAAAACTTAAATCAAAAGGC 675085 28 100.0 32 ............................ AGAGTGGGATAGGGATGCCAACTGGCATGCAT 675145 28 100.0 33 ............................ CAAACGAGATTTACCACGGCGTGATCGGTGTAT 675206 28 100.0 32 ............................ CTGCCGCTTTACATTGTTCGGATGGGGTCATT 675266 28 100.0 32 ............................ AGACAGCTTTGAAGTGTTTGCCACCCAAAAGG 675326 28 100.0 32 ............................ CGGCACTGGATTTTGCCTGTGCACAGTAATGG 675386 28 100.0 32 ............................ CGGCACTGGATTTTGCCTGTGCACAGTAATGG 675446 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : CCTTTTTTGTTTTTCTTTTTCCATATATTTTCCTTAAATTTTCCAAACGCTTCCATTTTTTCTCTATGTTTTCAGTATTTTTGGCTGAATTAGCGTGTCTGTAAATTCATCGAAATTACTGTCATTTTCGTTCAGTCATAAAAAAGAGCGGCTAGTTCTCTTCTTCGTCGATGAGTTTAGCTAGTCCGCCTCATTTTTGGTCAAAAAATCGGAAATCCTTCTTCTTACACAAATTCACTTGGTGATTGCCTGTGCTTAAATCTATATTGTATATATATGCAGTATTTTAGCGTTTGGTAAGCAAGTAAAGGCGAAGGTCGACAAGTGGACGGGTATTACGGTGGGCGTGGGAATTACGCCTTGGTTTTAACCCTTTTTTCTCGACCTAATGCCAAGCCCTTATAAATAGGGGCTTGGCATTTCCTGTTTAAAAAAGGGTATTTTTGCTAAAAATACACAAAGCTCTTTAACAATCAAATAGTTAATGCCAATTTTGTCTA # Right flank : ATAAGACTAAAAAGCCTACTAGAAATGAATCAGCCTCAAGTTTTACTTGCAAGTGATCCGCACCTTTGACGACGACCACCTCCAAACCAACCCCGCATGGGTCGACCAAACCATCGAACGTGTCAAAAATGCCACAGGTAAACACTTCGGAGAGGGTTAGAGCAGGGAAGGATCAAGGGGCGAAAGCTCCTTGGTTACTGTTTGAGTTGGTTTTGCACTGTGATATGGCTTAATATTGCTGAGCTCTAAGAGGGTAATTACAGAGAAGTATTGGAGTCAAAAATAGGATTTATTGACAATCAAAGGATAGATTATGGAACTAATTCAAGTAGATGATGTTAGAGCGCAAATTGCTGAGCTAAAAAAGCTAGTGAGAGTTGTTGATCCAGGAACGCATCCCACTCTTACTAATAATGGTGTACGAGAAATCGATTTTAAGTTTTCTAGTGATATGGAATACGTAGAAGCTTCTAGCGATGTTGGGCTTTCTTTTGCGACTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //