Array 1 178845-179849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXO010000007.1 Erwinia amylovora strain 1617 Ea_1617_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178845 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 178906 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 178967 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 179028 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 179089 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 179150 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 179211 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 179272 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 179333 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 179394 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 179455 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 179516 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 179577 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 179638 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 179699 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 179760 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 179821 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATAACGCTTCTTTTCTTTGGTTCTTCTGTCAGTGTTCCCCGCGTGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-4439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXO010000033.1 Erwinia amylovora strain 1617 Ea_1617_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 50 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 111 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 172 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 233 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 294 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 355 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 416 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 477 29 100.0 32 ............................. GGCACCGCCAATCTTCTGGCCCCAGTGATTAT 538 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 599 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 660 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 721 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 782 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 843 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 904 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 965 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 1026 29 100.0 31 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACG 1086 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 1147 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 1208 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 1269 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 1330 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 1391 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 1452 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 1513 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 1574 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 1635 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 1696 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 1757 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 1818 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 1879 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 1940 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 2001 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 2062 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 2123 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 2184 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 2245 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 2306 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 2367 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 2428 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 2489 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 2550 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 2611 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 2672 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 2733 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 2794 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 2855 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 2916 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 2977 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 3038 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 3099 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 3160 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 3221 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 3282 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 3343 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 3404 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 3465 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 3526 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 3587 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 3648 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 3709 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 3770 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 3831 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 3892 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 3984 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 4045 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 4106 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 4167 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 4228 29 93.1 32 .C...............A........... AGCTCGAATGCTACGCATCAGCACTGATTAAA 4289 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 4350 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 4411 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 72 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGCGAACCTATGCGGCATTAGCGGATGCCGCCGGG # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13558-16456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXO010000033.1 Erwinia amylovora strain 1617 Ea_1617_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13558 29 100.0 32 ............................. GCGGCGAAGAGACCGGAGCATGGGCTGTTGAA 13619 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 13680 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 13741 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 13802 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 13863 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 13924 29 100.0 32 ............................. CCATTCCCGAGCCATCGTCGCGACATCCAGGC 13985 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 14046 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 14107 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 14168 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 14229 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 14290 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 14351 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 14412 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 14473 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 14534 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 14596 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 14657 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 14718 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 14779 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 14840 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 14901 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 14962 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 15023 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 15084 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 15145 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 15206 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 15267 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 15328 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 15390 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 15451 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 15512 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 15573 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 15634 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 15695 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 15756 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 15817 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 15879 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 15940 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 16001 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 16062 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 16123 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 16184 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 16245 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 16306 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 16367 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 16428 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGCGNN # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 25920-26248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXO010000033.1 Erwinia amylovora strain 1617 Ea_1617_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25920 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 25980 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 26040 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 26100 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 26160 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 26221 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //