Array 1 60601-60771 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKC01000006.1 Enterococcus ureilyticus strain LMG 26676 14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 60601 34 97.1 35 .................................G TAAACTGCCAGATGGAAATAATATCATCCTGTTTT 60670 34 100.0 34 .................................. GGACAATTACCGTATTTTTCCATTAGTTTGATAC 60738 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 3 34 99.0 35 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : AGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGTTCAAAAAATGGGACTCGTCGTTTAAGAAAAGTGGCAAAAAAGTGCCAAGATTATGGACAGCGTGTTCAAAATTCTGTTTTTGAATGTGTTGTTGATGCGACGGAGTTAACGAAATTAAAGAAAGAACTGATTGATTTAATTGATGAAGAGCTGGATAGTTTGCGCATTTATCGATTAGGAAATAATTATCAAAATAAAGTAGAGCACATAGGGGCAAAGGAGAGCTTTGATGTAGAAGCGCCACTGATATTTTAATAAGAAAATTAAGTGCGAACCCTAAGTACACATGAAATCGCTAAGGGATCCGCACCAAAATTTAGCCATTTTTATTAATAAAAAGTTGTTCCTCTCATGGAAATTTAATTTTACAAGTGTTTTTTTGTGGAAAGGTGAAAATTTGTCGTATATTTTTGCTAATTTCACA # Right flank : ATAGCTGCTTCAGCTGCCAAAATATCAGTTTTTTGAGCCTAGCTCTATAACAACTTCAAATCAAAAAAATCAAAATGAAGATTTTTTCATCATCTCCTGATTGACCTGACTTAAATTACTAGGTACTCTATAAAAAAGGCGGGTGGGAGAATGAATGAAGTAGTCATTTTATTAATAGAAGATGAAGCAAGCTTAGCAAATTTCATTTCGGAGGAACTTCGGTTTGAAGGGTATAATGTTCTTTACGCCTCGGATGGTGAACAGGCATTGGAACTATTTAAACAAAATCAAAAAAGAATCACCATGCTGCTACTGGACTGGATGCTGCCAAAATATGATGGGATTACAGTTGCTAGAAGGATTCGAAGAACTAGTCAAGTACCAATCATTATGATGACCGCAAGAGATCAGTTGACCGACAAAGTGACGGGTTTAGATGCTGGTACGGACGATTATATTACAAAACCTTTTGAGATAGAAGAATTATTAGCGAGAATTCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58517-57944 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKC01000008.1 Enterococcus ureilyticus strain LMG 26676 16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 58516 33 100.0 35 ................................. TTACTTGCGCGTCACTTTACGTTAAGACAATCTTA 58448 33 100.0 34 ................................. TCTAAATTTAATAGTCCTACTGAAATACAAGTTT 58381 33 100.0 33 ................................. TTTTGTTTCTGTAGGTGCCGCTGCCGCTGCAGG 58315 33 100.0 34 ................................. GTCTCTATGTCTTCAAGCATGCACGTATCGATAA 58248 33 100.0 35 ................................. CTAAAGTGATGGGTGCTTTAGGCTTTAGCGCGAAA 58180 33 100.0 36 ................................. ATTATGATGCTCTATTAGGGGATGGTTGTTTCGATA 58111 33 100.0 34 ................................. CTAGTCAAAAAGAAACTTTAGTAAATCAACTGGC 58044 33 100.0 35 ................................. AGGAAATGGTACAACGTATGAATTTAATTGAAGAA 57976 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 100.0 35 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : CAATGATTTTGGTGGAATCAATCATTCGACTGTTGTGATCGGGAACAATAATAAAGTTACTAATGGGAAAAATCAAGAGATTGATTGGGCGCAATTTTCTACAGAAATTAGAACAATGTTGACACAGCTTCCCCAAAATAGTGAAGAATTTCAGGCTAGTTTGAAATTACTGATAGAATCTGAATCAAAAGATCAAGGGAAAGTTGCTACTTTTTTAAAGAAACATGCACCGCAATTTACTTCGGATGTGTTTAGCAATTTAGCAAGCGCAGTTCTTTCCGATACGATCAAGAAATTAATGTTTAATATGTAGTGAATAAAGTTAAGTGCTAAAAAAATGTGGGTGCGAACCCTAAGTGTACATGAAATAGCTGGGGGATCCGCACTGATTTTTACTGAGAAATGACTTGTTTTCAGTGTTTTTCTCATCGTAATCTCATCTTATAAGTTACTTTAGTTGGAAATAGAGTATTTTTTTAGAAAATCACTCTATTTTCACG # Right flank : CAGCTGGCAGATCATTAATTTCATTTGTTTCTTTCGGTCTCACTCTAACAAAAATACACTAAATCCTTAAAACCATCTAATTAAACAGATGGTTTTTCTATTTACGCTCATTATTTCTCAAAAATTTCCGTAAATAGCAAAGGAATTGAGTGGTCGCAACAACATTTTAAGAGGTATAATGAAAAAAGCGATAAAATAGATAGAAACGGCTATAGAAGATTCTAGAAGCGTTAAAAGGAGAGAACATATGATAAGAAATGAACTAAAAAAGAAAGCTCAAACCCATCTACATGGACATTACGGAAACTGGAGTTTGATTGCTATTTTACCTTGTGCAGTATTATTTATCTATTTCTTTTCTATAATTTTCCTGTTTCAATCGTCAGCGCACGTTAGTGATCCGTCAAATGATTATCACTCTTGGCAAGATGAGTATACTGAAAAATCGAACCGCACTTATTCTAACTATGAAAAAGGCTATGATGATGGCTATTCAGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 137246-139915 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKC01000039.1 Enterococcus ureilyticus strain LMG 26676 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 137246 33 100.0 33 ................................. CATATTGGGACACTTGCGTTATCGTCGTTTGGG 137312 33 100.0 35 ................................. AAATAAGCAAAGCATTGAATTTATCAGTACACGAA 137380 33 100.0 35 ................................. ATTTAATGAAGATACAGGAGAAACTACTAATGGTG 137448 33 100.0 34 ................................. ATTTAATGAAGATACAGGAGAAACTACTAATGGT 137515 33 100.0 33 ................................. GATAAAATTGTTTCACCTGTAAATTTATATTGT 137581 33 100.0 35 ................................. ATAAGGAGAATAGTGGTTCCTTTCAAATACAACAT 137649 33 100.0 34 ................................. CGTATACATATAATTGTATAAAGTTTCCTCCTGC 137716 33 100.0 35 ................................. GCCCCCATTACAGAACTATTATTATCGTTACTAAC 137784 33 100.0 33 ................................. AATCACCTTATTTCGTTATTTATTATATCTTGT 137850 33 100.0 33 ................................. TCCTGTTTTAGGATTATCCCATGAATAATAAAT 137916 33 100.0 35 ................................. TAAAGACGAAAGTATTATAGTTAAAGGAAATGATA 137984 33 100.0 36 ................................. AAACAGAACGGATGGAAAATCATTTAACTATATAGA 138053 33 100.0 36 ................................. ATTAGATATAAATTCATCATATCCTTATGTTATGAA 138122 33 100.0 35 ................................. CATGTAAAAATAGACAGATTAACTGTTATAGCTTG 138190 33 100.0 36 ................................. CCTAACATGCGCAAGCTGAACATCGGGGATCTGGGC 138259 33 100.0 36 ................................. AAAGATAGCCAGCTTGTCGCATCGATGAGAGCGCAG 138328 33 100.0 33 ................................. TTTTTCTATTTGAGCTTGTTCGCTCAACGTTTT 138394 33 100.0 35 ................................. ATTTACAGGGTATTATATTGTAATGTACGCAATGA 138462 33 100.0 36 ................................. GATATAATCGTGTGCCGTTAAACCTAGTTTTTTGGC 138531 33 100.0 34 ................................. TTGTGTGATTGTACTTCCTGCTAAAGCATAAATT 138598 33 100.0 35 ................................. TGGAAATAGCGACATACAAAAATCTACAGAGATGT 138666 33 100.0 33 ................................. ACAGCAAACATATCCTTAAAATTATCAATACTA 138732 33 100.0 35 ................................. AGATGCCTCAACGCTTTGTACAGTTCCCAGTTTTG 138800 33 100.0 33 ................................. TTGAAAGTGCAAGCTAAAGCATTGACTGAACAA 138866 33 100.0 36 ................................. CAGATAAATACAAGTCTAAAACGTTGCTATGTAAAA 138935 33 100.0 35 ................................. CTTACGAGCGCCACCAGAATTATAGGATACTTTTT 139003 33 100.0 35 ................................. AGAAATATTTATAGAAAAGTTACAATCTATACATT 139071 33 100.0 33 ................................. AGATATTCTAAATTGCTTAATCATTTGGCGGTG 139137 33 100.0 34 ................................. CTTGTGCATTATCATTTCTTGTCATAATCATAAT 139204 33 100.0 33 ................................. TGTACCCATTCAACAATTGGAGCTAAGTCTACT 139270 33 100.0 35 ................................. TTGTTGAAACTCTTTTGACATAGGGAAAAACTCCT 139338 33 100.0 35 ................................. TCATAAAAGCCCTGTTATTTAATCGTGTTACTCAT 139406 33 100.0 33 ................................. AACGCTTAACAATGATGATTTTACGTATATAAG 139472 33 100.0 36 ................................. AGTACATAAAACATAGTGTTCCGCGTAAGGTACAAT 139541 33 100.0 35 ................................. AAAAAAATGATCGGTTATCTAAAAGAATTAAATAT 139609 33 97.0 34 ...............A................. TTTGATATTGAAACACTTATGTATAATAAAAGAA 139676 33 97.0 36 ............A.................... AATTCAGGTTCAAACGTGACAATCTCACAATCAAAT 139745 33 100.0 35 ................................. ACGGATCAGTTAAGCAAAGTGAAAGCTGATATCGA 139813 33 100.0 35 ................................. ATTTGCTTAAGATAATCAATTTGGGCTGCAACGCT 139881 32 87.9 0 .......................-TC..A.... | ACC [139903] ========== ====== ====== ====== ================================= ==================================== ================== 40 33 99.5 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGCAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCATTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACTCTCATGTAGTTTGGCAAAAACGAGTATTAGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAATAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCAAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAACTATATAAAGAAGAATTTGGAACTACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGATTTTAGTTAAGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGTGGAAATATGTCATGTATTTCAACTATTTTCACG # Right flank : TCTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAACGATTTATTTTAAAAGATAGTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGTAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACAATCCAAAGTTACAAACACGATGGACATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 206056-206292 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIKC01000039.1 Enterococcus ureilyticus strain LMG 26676 6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 206056 33 100.0 33 ................................. ACTTTATACGTATAATTTTGACGATGAAGACTT 206122 33 100.0 36 ................................. TATATTATTTACCTTGTTAGTTAGCTCTGTTAAATC 206191 33 100.0 36 ................................. TAAAAGTGGTATTGAGGTAGAGAAAATAACAAAAAC 206260 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : TTATGACAAATGCGCAAGCAGGTGTAAAAAAGATGACGATCAGCGCTGTACATGCTGGAAAGATATTTGTTGATATTTTGGGAAATAATACAACAAAAGTTATTTTAGATGAGGCAGGTGCGGGGGATTTTCCAGTGAATGGTGGAGAAATTTCTATTTATGTAAATGAAGCTATTGTAGAACGATTACGTAATGGGTATGATAATGGGATTAATCGGAAGGAAGAATCTATATAAGTATCAAGGTGCTAGGAGCCAAATAGAGCGTGACTTATGACAAGATTGTGATTATACTATATATAAGTGATATAAGTGAAAAGCCATTTGTTCGCATTGAGATTCGGTGCGAACCATAAGTGCGCATGAAATCTCTGGGAGATTCGCACCAAATTTAGAGAGGAAAACAATATAAATAGTTGTTTTTTCTCATCGAAATCACATTTTAATGTGATTTATAATGTGTAAAAGAGCAAATAGGTACAAATTTGCTGTCTTTTCACG # Right flank : TATCGGATGCCATCTGCATTCAAAATATACTAAATGTCTCACTCTTTATTGAGTGATTTTTTTTATTTAACTTACGCGTCTATCACTAAAGAAAAAAGCAACACACGATCATTTTATTCTCTTAAAATACGAACTTAAAAAAAGAAAATATGTTCTATAAATTCCATCATTATTAAAGAATTTTCCAGCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCACGACAAAAGGAAGCCGTTTTACATACAGAAGGGCCTTTACTGGTTATGGCGGGCGCAGGTAGTGGGAAAACAAGAGTATTAACACACCGCATTGCCTATCTAATTGAAGAAAAAGATGTTAATCCATGGAATATTTTAGCAATCACTTTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGGAAATTACTAGAAGTTGGCGGAAATGATGTTTGGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //