Array 1 2092-390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAR01000071.1 Cardiobacterium hominis strain 598_FBAL 724_32686_542758, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2091 36 100.0 33 .................................... ATGAAAGGGCGTAATGCCCTGATGTACCAGCTT 2022 36 100.0 35 .................................... TAACTCATGTTAGTGATGCCATATCCAAGACTTTC 1951 36 100.0 33 .................................... TTCTGCCACCTGATAAATGCTTTCGGCGGAAAT 1882 36 97.2 34 ...............A.................... GGGTAAGAATTCCGGACTTGAGTACTCATTGTTG 1812 36 100.0 32 .................................... ATACAGGTGATAGCTCGTTCTACTGAATAAGC 1744 36 100.0 34 .................................... TTACGTGATTCCCAGTTGTTATAGATTGCACTCG 1674 36 97.2 32 ..................C................. ATACGGCCGGTTGGTGTGGATTTAGATAGGGA 1606 36 100.0 33 .................................... TTGTTGGCTTCATCATAAAAATCCAACAATTGC 1537 36 100.0 33 .................................... CTCTTTTCTCTTTTTCTTTCTCTTCCTTGTACC 1468 36 100.0 33 .................................... ATTAATAGCAGCCTGACCAATAGAAATCTTCAT 1399 36 100.0 34 .................................... CTACAAACACCGGGCGGGGTGTATTCTCGAAATC 1329 36 100.0 33 .................................... CAACTTGCAGTTGGTTTTGATTGCTCATGAAAT 1260 36 97.2 34 .........T.......................... GCGGCTTTGTGATTATTCAAGCACAAGCAATGCT 1190 36 100.0 33 .................................... TGTAGTAGCCGTGGCGGGAACGCATCACTATCA 1121 36 100.0 33 .................................... TACCACCCTTTATGTTCTCAGTCCTTAAACTCC 1052 36 100.0 32 .................................... GTCGGCGAAGACGGTGTACGTCAGCTCATAAT 984 36 100.0 36 .................................... TTCCGCAGCCTTTTTGTTCGGGTCAAATGCGCTTGC 912 36 100.0 34 .................................... TGGGGAAATTGATAATCCAGCGTGGACCATACAG 842 36 100.0 34 .................................... CGCCATAGATTGCTGCGTATCTTTAATAGGATCA 772 36 100.0 33 .................................... ACGCCGCGACTGCCGTAGTATTCGCCGTGGATG 703 36 100.0 32 .................................... CTGCATCGGCGGTGAAATCAAAATATTGTTGA 635 36 100.0 34 .................................... ATTTGGTTTGCGAGAATTATGATTTTTCCCATGA 565 36 97.2 33 .................A.................. AGCGACGCCGCTCAACATTGCCTGTTCACACAT 496 36 100.0 35 .................................... CTATCTATTTAAAAAATATAAATACCGTCTGTTTG 425 36 77.8 0 ...G....AA.T...................TTTT. | ========== ====== ====== ====== ==================================== ==================================== ================== 25 36 98.7 33 ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Left flank : AGAAAAAACCATGCCCGACTACCTTATCGCCTACGACATAGCAGCGCCCAAGCGCCTACAAAAAATCCACAAATGCCTCTGCGAAGAAGCCATCCCGCTACAAAACAGCACCTTCCTCTACCGCGCCAGCCCCGGCCAATTCGAACACCTCTGGCAAGAACTCGCCCTGATGAGCAAAAACGAAGACGACCTGCGAGCCTACCGCCTCCCCGCCGCCAGCCTCTGCTACGAATACCACCCCAAAACCCCGGAAGGCATCTACTGCCTGTAGCCCATTTCCAAAACCACCCGCAAAAAAAACAAAAAAAACGTGCCAGCATAGAAAAAACCAACCAAATACAATAAAATACGCGCGCTATCAGCGAAGCAACGCCACCCCAAACACCCCATGAAAAACCCTAATAAAAACAACGGCCGAAGCGCCAACTTTTTCACAAAAACAAAAGTTGGAAACGCCCTCTGCAACACATTGAAAACAAGGAGAAAAAGCACCCCTGACT # Right flank : CCTTAATCTGCCCGCTTTTGCGGGCTTTTTTATATGACAAATTTGTCGTTGCAGACTGGCTATAGCAGGTGCGTTATTCTTGTATGTTTGTTAAAACACTGTTTAGACATCTTTAAGCAGTGCGTCATAAAATTGTCAAAACAGATAGATTTTTCTTTCTGGCGTAATGTGCCTGCATCGCAACAAGATGATGCAATGATAAGAGCGATGCCTGCTTCCAGTGTAAAGAACCGCCCAGACGTACCGAGTATCTTTTTTGCGCCCGCTGTCCAGAATTCCACCAAACAGCAATGGGTGCTTGTTTGTTTTACTGATACTGGCTGCACTTATAGCGATACACCGAAAGCCTCAGACAAGGCGCGTCGCTGAAGACAGTACGCGGTTGTACGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 50543-49943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAR01000149.1 Cardiobacterium hominis strain 598_FBAL 1122_52004_852932_731+,...,859_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 50542 36 100.0 33 .................................... TTTTTAATGGCGTAAATATGGCGTAGATTTTGG 50473 36 100.0 33 .................................... CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA 50404 36 100.0 33 .................................... CAATAATCCCAAATTGTTGCGCTTGCGTCATTC 50335 36 94.4 34 ...A......T......................... TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG 50265 36 100.0 34 .................................... TCCAAAACTTCTTCAAAATCACAACCTTCCATAA 50195 36 97.2 41 ...............................A.... CTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGG 50118 36 91.7 34 ...AG...C........................... GGTTGTTGTACGCTCGGTTGTACTCCTTGCGATA 50048 36 97.2 34 ................................A... ACACATTACAAGCGCGCCTGCTGAAAAATGCTTA 49978 36 83.3 0 ...A....C...................T..T.C.T | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 96.0 35 ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Left flank : GCCGCACTCACCGCCGCCTTGCTCAATGGCGCAGCGCTTGCCGACGCCGTACAAAGCGCGGGCGACTGGGTGGTTGCCGCCCTGCGCTACACCGCCGCAGAAAACAGCGGCGAACTGCGCTTCCCGCCGCAATAACTCGCCCCAAGAACCATAGAAAACAGAAACGGGAAAACCGCCGATAACCCCTCTCCCCTCTCTTGCTGCGCAAACCATACTTGCGCAGCAAGAGAGAAAAGGAGTGCGCGCTAAAACAGCACGTTTTACAGCTTGGCATCCTGAAATACCATAAATAACAACGTTGCAACCACATCCAAAACAAATGACAAACAGCGCTTAGCGATGCATACAAAAAACCAATACCCCTCAAAAAACTGCTAAAATACATCCCATGATAATCCCCAACAAAATCCGAATGATAAAGCCCAACTTTTTGCAGATTACAAAAGTTGGAAAACCCCCTTCTAATAACCTAAAAACAAAAAAGAAAAACACACCTCGCT # Right flank : AAAAAATGCCGACATTCGTCGGCATTTTTTTCGGTGATGCGCGCGTTGGATGCGCGGCGGGGTTTCGCAGGCGGGTTCAGGTCATCTCCCTGCCGCTTCCGCCTGCGCTTCCAACGCGCTTTCTTTGACGATGCACATCGGTTTGCCGCTGACCGGGCAGGTGTACGGCGCGGCATTGACCGCGAAGACGTCGGCGAGCAGCGCCGGGGTCAGCACTTCCGCCGGACTGCCTTCGGCGACGAGTTGCCCCGCTTTCAGCACGATGAGGTGGTCGCAGTAGCGCGCCGCCTGGTTCAGGTCGTGCAGGACGGTGATGACGGTCGTCCCTTTTTCTTGTTGGACGCGCATCATGTCCATCAGCGCGATTTGGTGGTTGAGGTCGAGGTAGGTGGTCGGTTCGTCCAGAAGCAGGTACGGCGTTTCCTGCGCCAAGGTCATGGCGAGGAAGGCGCGCTGTTGTTGGCCGCCGGAGAGTTCGTCCACGCGCTTGTCGGCGAGCG # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 1 24996-24763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAR01000130.1 Cardiobacterium hominis strain 598_FBAL 1099_47240_808786_415_,1062_,387+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24995 32 93.8 34 AT.............................. CGATGTGGTCTATGTCGATCAAGGCAAGCCGGTG 24929 32 100.0 35 ................................ CTGCGCCTTGGAGCGGTTGGTCTTGTAGTCGTCCA 24862 32 100.0 36 ................................ CGCGGTGGTCATCCTCACCGATGACAACACGCACAG 24794 32 96.9 0 ............C................... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 97.7 35 CGTCGCTCCCCATGCGGGAGCGCGAATTGAAA # Left flank : GAAGGCATTGACCTCGCCCTGCGCGTCAGCCGCGCGCCGATACCGAGTCTTGTCGTCCGGCGGCTGTTTGAAGTGCGCTTCGCGCTGGTCGCCTCGCCCGCCTACATCCGCCGCCACGGCCTGCCACGAACGCTTGAGGACGCCGCCAGCCGCAGCGCCGTTCTCCCATCGTATGCCGACATCAGCCGCATGGACTGCCGCCGTGGCGACGAAAGCCACACCCTGCACCTGCACAGCGCCCTGCAAAGCAACAGCACCGTCATGCTGCACCAACTGCTGCTTGCGGGCAGCGGCATCGGCTACCTGCCGCTGTGGCTGGCGCAGGACGACCTCACCGCCGGGCGGCTGGTGCGCCTCCTGCCGGACTGGCAGTTACGTAGCATCACCCTGCACGCCGCCTACCCCGACCGCCGTCACCTCAGCGCGAAAATCCGCAGCTTCATTGATTTTCTGGTGGAGAAGGCGAAAACGGTAGAGGGCGATTGAAGTGACAGGGTGTT # Right flank : TTTACAAAACTCGCAGCGGTCGCCACGAGCGGAAAATCGCTCCCCACGCCCTAACCGTTCCCCATTTTTGGGCGCTCCGCGCCGTTCAAATGTGCACGGTCTTCGCTACGGAATGTTGTGTGTATAGCGGGCTGTTGTATGGAAATAAATGGGATGGCGATACCGCGCCAACCCGCAACACCGCTTTGGTGGGCGGTTTTTTTCACCGCACCGTTGCGGGTAAAGCAAAACCCGCCGGGTGGCGGGTTTTGGCGAGTGTGTTGTGTGTAGTTATTGGTTCGGTCGTGGCGCGGTGCTTTATTTTTCCAGCAGGGCGCGCAGCATCCACGCGGTTTTTTCGTGGGTTTGCATGCGGGTGGTGAGGAGGTCGGCAGTCGCTTCGTCGTTGGCTTCATCGACTGCCGGGAAGAAGGCGCGGCAGGTGCGCACTACGGTTTCTTGGCCGTCCACCAGTTCCTGGATCATGGTGAGGGCGTCGGTTTTGCCGTTGCATTCTTTGA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCTCCCCATGCGGGAGCGCGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : NA // Array 2 29756-27610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAR01000130.1 Cardiobacterium hominis strain 598_FBAL 1099_47240_808786_415_,1062_,387+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 29755 32 100.0 34 ................................ ACCGTGGCGGCGACGGAAAAATGGAATGACAAAC 29689 32 100.0 33 ................................ TAGGAGCCACCCATGACCGACCCGAAAAACGCC 29624 32 100.0 34 ................................ GTCAAGGGCGTGCTGATAGCCTGCCCGGAAAGCC 29558 32 100.0 33 ................................ TCCACCTGCGGATAATGCGCGGCAACGCAGTGC 29493 32 100.0 35 ................................ TCCATCTCTCCGGCAATGCGCATCGCCTCGGTGAG 29426 32 100.0 34 ................................ GCCTTTAGCGTTGATGATGTAATACATGTGCTAC 29360 32 100.0 35 ................................ GGGTACGGCGGCGTAATCGCCCGCGTTGAGTTTGC 29293 32 100.0 34 ................................ GAGGCCTATGAGATCGGGGCGCTCGACCCAACCG 29227 32 100.0 33 ................................ TTCGGGGGTGACAACCGGCGCGGTGAGGCCGGT 29162 32 100.0 34 ................................ TCTTGCGTGGTGGGCTGTTATCGGCATCTGATAG 29096 32 100.0 32 ................................ ACACCAACGACACAGGCAAAGGCTTCATCCTT 29032 32 100.0 34 ................................ TTCAATGAGCAGAATGCGGGCATTGCCGCTGTAA 28966 32 96.9 34 .......................G........ GCAGCGACCAATCACCAACCTGCACCCGCACCAG 28900 32 100.0 34 ................................ CAGGTTGGCGTGCAGAGGTCGGCAAGCAGCCGCT 28834 32 100.0 34 ................................ CTCGAAGACATCTACGGCAGCACCACCCGCCGCC 28768 32 100.0 35 ................................ TTGGTGTCGCGCAAATGGGCGATACCGTCGCGGAT 28701 32 100.0 35 ................................ CAGGCGACCACATCCTGACGCCCGAACTTCGATAC 28634 32 100.0 34 ................................ CCATCGCTATCTTATGCGAGGGCATGGCAATTTT 28568 32 100.0 34 ................................ GATGCGCCTGTAGGCCTCCATGTAGGTCATGGCA 28502 32 100.0 34 ................................ TCCTGCACATAGTGGCAATCCCGATTATACCGAG 28436 32 100.0 34 ................................ TACAGAAACATATATGCCGAAGATGGTCACGGAA 28370 32 93.8 33 .......T..............A......... CGCATGGCAGGTAGCGCATGAGAACCTGTTAAA 28305 32 100.0 35 ................................ AGCGCGCTGCAAAGCGTGCTGTCTGGCCATATATC 28238 32 100.0 33 ................................ TCCGGCGAGCAGACGATGGTGATCGAACTGGGC 28173 32 96.9 34 ....................T........... CCTACCCGTTTGCAAGCCGAAATCACCCGGCGCT 28107 32 100.0 34 ................................ AATTGAAAATTGTCCCACTAATACAAGAAGACGG 28041 32 100.0 34 ................................ CTTAAAGGGCTGGGCAATTTCCTCTTTGAGGAAA 27975 32 100.0 36 ................................ GTTGGGTGAACGGGTCTCGCTGTTACGCTTACGCAA 27907 32 100.0 34 ................................ CCCTTGCCGCACGCGGAAAACCTGCTCTCCGAAG 27841 32 100.0 33 ................................ TCGTCGATGTTGTATTCGCTGTGCCACTTGGGG 27776 32 100.0 35 ................................ TTCGCCACCCTCGGCGGTTATTTAGCGTCGCTTGT 27709 32 100.0 33 ................................ TCTGCTATTTTCTGTATGCCAAAATCGCAATAC 27644 31 84.4 0 ...........C.T.......-.T....T... | GCTC [27616] ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.2 34 GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : CGCAATATCCACCTTTCTTGATGCGATAATGTTGGTATTGATTACTTACGATATTTCCTTTTCAGATACAGCGGGTGCAAAACGTCTGAGACAAATAGCAGCGCATTGTCAAGATTATGGCGTGCGGGTGCAATATTCCATTTTTGAATGCGATGTGAATCCCGAACAATGGGTACGGCTAAAAGATAAATTATTACAAACCTACCAGCCGGAAACTGATAGCTTACGGTTCTATATGCTTGGCAGCAAGGGACGTAATAAAATTGAACATCATGGTGCCAAAGCAGCCCCAGATATATTTCGTGATGCATTGATTATCTAGCGCTAACCATTAGTTCTCATCGAAAGGCGGGAGTATTGGCGGCAGATATAGCGTGCTGAATAGAAATAGATTTAAACACATAGCATACGAATTGCATCTTACCCTACTGTACTTTGTCTGCTTAGCTAGCGAATAGTGCGCTTTCTATGCAGGCTGTACCTGCCATTGCATGATGGCA # Right flank : CCAATAATTTTATTGTGTTCTCCCACTCAATATGAGCATCCTGTCCGCAAGCATTGTGGATAACTTGGTGCATAAACTGCGGGGTATTGTGAAATTCACAGCGCGTGCCACAGCCTGCACATGACGATGCAGCAATATTGGGAAAATAAATTTTATTGGAAAACAGGGTGTTAAGCAGAAAAACCTGTAAGAAAAGCATTTTTTTAGGTTGCAATTCGCCAAGGCGCGCCAGTATGCGATTTGTGCATAACTTTGCTGTTATCGCCATCCCCCGAATGCTTCATACGGCGCTGCGCCGCCTGACCGCCCCCATAAAAGAAAGTAGCGACATTTTTATGGACAACCCGCGCCGTACAACCGCGTGCTGTCTTAGGCAGCGCGCCTTGCCTGAGACTTTCGGTATATCGCTATAGTACGGGCACCCACCGCTGTCGTCGCTGGGTTTTCAGTTGTTATTTCAGTCGTATCCGGCAATGAAAATCTGTTTCTGCGGGAATTCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //