Array 1 43375-39338 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQM01000215.1 Serratia marcescens strain 1844 NODE_266_length_102580_cov_27.036499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43374 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 43314 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 43254 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 43194 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 43134 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 43074 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 43014 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 42954 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 42894 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 42834 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 42774 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 42714 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 42654 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 42594 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 42534 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 42474 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 42414 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 42354 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 42294 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 42234 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 42174 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 42114 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 42054 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 41994 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 41933 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 41873 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 41813 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 41753 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 41693 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 41633 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 41572 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 41512 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 41452 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [41406] 41405 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [41397] 41344 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 41284 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 41224 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 41164 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 41104 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 41044 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 40984 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 40924 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 40864 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 40804 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 40744 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 40684 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 40624 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 40564 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 40504 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 40444 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 40384 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 40324 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 40264 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 40204 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 40144 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 40084 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 40024 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 39964 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 39904 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 39844 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 39784 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 39724 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 39664 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 39604 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 39544 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 39484 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 39424 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 39364 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 54598-52224 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJQM01000215.1 Serratia marcescens strain 1844 NODE_266_length_102580_cov_27.036499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54597 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 54537 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 54477 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 54417 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 54357 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 54297 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 54237 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 54177 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 54117 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 54057 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 53997 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 53936 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 53876 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 53816 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 53756 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 53696 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 53636 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 53576 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 53516 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 53456 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 53396 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 53335 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 53275 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 53215 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 53155 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 53095 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 53035 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 52975 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 52915 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 52855 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 52795 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 52735 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 52674 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 52614 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 52554 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 52494 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 52434 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 52374 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 52314 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 52254 28 96.4 0 ....................A....... | G,A,A [52227,52231,52233] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //