Array 1 122147-121325 **** Predicted by CRISPRDetect 2.4 *** >NZ_QODW01000027.1 Escherichia coli strain AVC64 scaffold_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122146 29 100.0 32 ............................. GTCAAATCGGTTACCTTAACCTGTTGAATGTG 122085 29 100.0 32 ............................. AACGGCTACGGCACCGAGGTGACAAACCAGAT 122024 29 100.0 32 ............................. AACTCCAGGATATTGCAAACCGCATAGTGGAT 121963 29 100.0 32 ............................. AACTCCAGGATATTGCAAACCGCATAGTGGAT 121902 29 100.0 32 ............................. CCGTTGCGCTGGCATCGGGTGTACCTGTTGTG 121841 29 100.0 32 ............................. ATTACGACTTCCGCACGCACCCACCGTTTGTA 121780 29 100.0 32 ............................. TTGGGCTAGGAGGAAGAGCATCATTAACATGG 121719 29 100.0 32 ............................. GCGTTTCTGGCGGGGGTAGGGAACGCCCAGAA 121658 29 96.6 32 ............................T GAGGCGGCTAAACCGTCGCGCACACGAGCGAC 121597 29 100.0 32 ............................. CGTACTGCTTACTCCGTCATCGATGTATGAGT 121536 29 100.0 32 ............................. TACGTGTCGCCGTTACAGATTTCAGTCTGTTA 121475 29 100.0 32 ............................. GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA 121414 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTTGAGGCGTGGGC 121353 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17867-16984 **** Predicted by CRISPRDetect 2.4 *** >NZ_QODW01000013.1 Escherichia coli strain AVC64 scaffold_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17866 29 100.0 32 ............................. GCTGGATACCGATCAATTCAATATCGTTTTAC 17805 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 17744 29 100.0 32 ............................. ACGAAAAACAGGCTGCAAGTCTCGCTGACCAA 17683 29 100.0 32 ............................. CCGGTTAATTTGTTGTACCCGTCGCGCGGTGG 17622 29 100.0 32 ............................. ATCGCCTCAGCATTTTTTTTACGCTCAGGGTG 17561 29 100.0 32 ............................. GTTAATGATGTCAGTGGCGGTTTTCGTATCGC 17500 29 100.0 32 ............................. AGTGAGGCAATCAAATGACCCGCCCGCAATTA 17439 29 96.6 32 .............C............... TAAATCCCTCGCGCATCGAGTCAAATGTCGGA 17378 29 96.6 32 .............C............... GTCGCTGGAACGGGGCGAATAAAGAGGGGCTC 17317 29 96.6 32 .............C............... ACAGCTCTTTCCCGTCGTTATCCAGTTGGTAA 17256 29 93.1 32 .............C..............A TATGATTCACGAATTACAGGAAACCAGCCGCC 17195 29 89.7 32 ............TC.......G....... CTATCGGGGTGATTCTGCCAATGCTCAGAGTG 17134 29 93.1 32 .T...........C............... AGCGTTTGCTCCGGGTGGAATAACCCTGGCGG 17073 29 89.7 32 .T.........T.C............... TTTGCTGGAACCCAAAACTCAGCGCACAGGTT 17012 29 89.7 0 .T...........C..............A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.3 32 GAGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CTGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAAACTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAACTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTATTTAACATGATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATAATTCTTAAGCCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //