Array 1 277143-276719 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890328.1 Clostridium neonatale strain LCDC no.99-A-005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 277142 30 96.7 34 ............T................. AAAACTCGTAAATTTCTATTTGCTTTCTACTATC 277078 30 100.0 36 .............................. ACTTTTGCATTAGTTTGGGAAATATCAAAAACATAT 277012 30 100.0 36 .............................. TCTATAAGACCACTTTCAAAATCATGTGAGCGTTTC 276946 30 100.0 36 .............................. ATATATAATACAATTGCCTATTTAATTTTAGGTACT 276880 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 276814 30 96.7 36 ...............T.............. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 276748 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 94.8 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : ATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCACATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGATCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCTGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCTATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGGATTAA # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCCAAAAACCAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATCGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 2204037-2202371 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890328.1 Clostridium neonatale strain LCDC no.99-A-005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2204036 30 100.0 35 .............................. CAATCAAAATATTCCTTAAACTCTCTTTGAACTTT 2203971 30 100.0 35 .............................. CTCAATGTTGATTGAGATAAGTTTGCTTCTTTGCA 2203906 30 100.0 37 .............................. AATGATTCATGCTCCACAAACTGGGGACGTTGTTAAG 2203839 30 100.0 35 .............................. GAATCAGAGAGATTAGGATTAGACCATGTTCCTTA 2203774 30 100.0 36 .............................. TGAAGATAATAAAGCCTTAATTGATGGTGAATTAGT 2203708 30 100.0 37 .............................. TTGAGAAAATTAGCTGAACAATGGGGATGGAGTACAA 2203641 30 100.0 36 .............................. CTGCTATTGGAATAAGTGTAGGTAGTTGCACACCTA 2203575 30 100.0 35 .............................. ACAATATAAGGTTCATCTTCAATCACAAATTTTTG 2203510 30 100.0 36 .............................. AACTATATTTCCTTACATTAAGCAATATGTTATGGA 2203444 30 100.0 36 .............................. GAAAAAGAACAATGGATTTCTAAAGAAGATACAGGA 2203378 30 100.0 36 .............................. AAAGGTTTATTAGCTGCATATATTACTATTTCATAA 2203312 30 100.0 34 .............................. AATAGTTGCGAACACATATTCGCATGTGGTATAA 2203248 30 100.0 34 .............................. AATGTGTATAGCAATGCCAATAGTGGTTCTAATA 2203184 30 100.0 35 .............................. TTATAATTAATCTGAATGTCACCGACTTTAATGGA 2203119 30 100.0 36 .............................. AATATAAAATCCCCAAGAGATGTTGAAAAATATGTT 2203053 30 100.0 36 .............................. TCATTAGCCAATTCCTTTAGAGATGATACAAGCTTT 2202987 30 100.0 34 .............................. TCTAAAACACCTTTTTGTCTTAATAATTTAATAG 2202923 30 100.0 34 .............................. TGGATTGGAAGATATAGACGAGGTGGAAGAAAAT 2202859 30 100.0 37 .............................. TATCATTAAACTTAGAAATAAAATCCATAGGTATTCC 2202792 30 100.0 34 .............................. AGGTATTATTTCAAAAGATCTGTGGAATGAATGT 2202728 30 100.0 36 .............................. TCTTTTCTTCTATAGGTTAGGGAATAAACACCTTTA 2202662 30 100.0 35 .............................. ACTTTAAGTGATTGGAAGAAAGGCCGTAGTACTCC 2202597 30 100.0 36 .............................. TTAGCCATATCCCACATTTCATAATGTACTGGTGCA 2202531 30 100.0 36 .............................. ACAGGAGATTTTAAACGGATTTGAAGCGTAAGGAGG 2202465 30 100.0 35 .............................. ACCAGCTCAAAGCCTGTATAAACAAATGGCGTTTC 2202400 30 93.3 0 .................A..........T. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 99.7 35 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : GAATTTGTTCCCTTCAGTTTAAAGGAGGGGATGTAGTGGGAAAAGTAACGAACTATAATTATGCATTTGTATTTTATGATGTTAATGAAAAAAGAGTTCAAAGAGTGTTTAAGGTTTGTAAGAAATACTTATCACATTTTCAAAAATCAGTCTTTAGGGGAGAAATGTCGCCGTCAAAATTAATTAGATTCAAAACAGAATTAAATAAAGTAATAGATAAAAATGAAGATTTTGTTTGTATAATAAAGCTTATGAATGATAATGTATTTGGTGAAGAAGTACTTGGATGTTCAGCCAATAATACAGGAGAAGATTTAATAATATAAATTTACCAGGTAGAAATTTTAGCTATCTTTGTTAAAGCTAGAAATGATGGGATATTTGATAGTTTTAACATATTTTTATCAGAAAAACTTCATTCCTTGGTAAATTTTTGGTGATGTGGTATTATTACTAGTATAGGGGAATTTTTGAAGTTTAAGAATGCCTAAATCGCGTTG # Right flank : TATAGAGTACGGAAAAGATTATTTTAATTTCTATATTTATTAAAAGAATTCGGAACAAAAAGATATATATTTTTAAAGATATGCTATGATATGCTTATATATAAAAAAATATTAAATAAAGTGAGGCCAGTTAAAAGGTTTATTTTTGACTGGTTTTACTTTATTTAAATTAATCTAATATAGCTATGATTTTAATATCTAAATTAGCTGGTTTTAGTATTTTTATGGTGATTATTATTTTATTCAGATAAGTCAATGGCAGATTTACAAAAGCAGCAGATTTTTAAAACGTAAAAATAATAAATTTATATTAAATAAAACATAAATTTTTTGAAAAGAATAAGTTAAGAAATAAAAATAACATTATGATTTATTTTTAATTTAATGTTAAACTTATATTAAGTATGGAAAATTTAGAAATATTTAAGGAGTAATTTATTATGAAGGATTCAACTCACAGAATAGCTATTCCTTCTATCTTAGAAGTTGGAAAAGGAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 2230094-2231037 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN890328.1 Clostridium neonatale strain LCDC no.99-A-005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2230094 30 100.0 36 .............................. TAAGTATTGGTATCCAGTTCAATATAAAAGATGGCA 2230160 30 100.0 35 .............................. TCAAAAAATTCAGGAATTTCACAAACTACACTGTG 2230225 30 100.0 34 .............................. ATTTACAGTGAACTGTAATGCATCAGTTACTACT 2230289 30 100.0 36 .............................. TTCATATTTTTGCAGATGAATTTGCTAATATAGGCA 2230355 30 100.0 35 .............................. CCTTAAACCCTCCTAACTATTAACTAATGCTAAAC 2230420 30 100.0 35 .............................. GGGACTTTTGCGATAGGTTGTTTACTAATAAGGTT 2230485 30 100.0 36 .............................. GAGTGTTCTTCAAAAGTATATAGATATAGCTTTCGC 2230551 30 100.0 36 .............................. TATGGGAAAATGTAAAAAATGTTTTATCTAAGCACA 2230617 30 100.0 36 .............................. CAATAGAAAAATAGTTTACAAAGATATTTCTTACGC 2230683 30 100.0 36 .............................. TTAGCTCTATCAAACATTTCAAAAGCCATTAGGTAC 2230749 30 100.0 34 .............................. ACAATGACTTTCAAGGAGCCATAAATTTTAAAAA 2230813 30 100.0 36 .............................. AAGGGTGGTCGCTCGGTTTAGATGGAACGCACTTAC 2230879 30 100.0 36 .............................. CAACCTCTTCCTTGTTATTATAATACCTATTATTTA 2230945 30 100.0 33 .............................. AGGATTAACAATTCTCTTAAGTGGAGCATCTGT 2231008 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 15 30 100.0 35 ATTTAAATACATCTCATGTTAATCTTAATC # Left flank : TACGCTTTGAATAATATTCAGGTATCTTATACGAATTGTGACACTCAATAACATTTTTAATTAACTCATCTTCACTTGTATCTTCAATGAATTCTCTTATTTTACCCTCTTCAAATAAAATCTCTACCCCAAGCCTAGCATGATCAATTGACTTAGAATCATTAAATGTTCCATATCTTCTTACCTGTTCAAATCTTCCTATATCATGTAGCAGTCCAGTAAGCCATGCAATATCAATTTCTTCATTTGTCATCTCTAAGCTTGATGCTATTTTTTCACATAGTTCACTTACACGATATGTATGATCTATTTTTAATTTTATCTTTTCATTGCTGGTATCATACTTCTCAACATAATCATTAAATACTTTTTTAGATTTAATTTTGTCTATATACATCTTGCAGACTCCTTTATTTTTATAAAAAATCCTTTTGTATTATAAAGCCATTAGTTTTATATTTTTAATATTTTACATAATAATTAGAAAGCTATTTAATCAT # Right flank : CCTTAGAAAAATAGCCATTCTAAAAATAAAAGAATTCTTCTATCCAAGAAATAACGCTATTCTTCAAAAAATTTACCAAGTGTTTTCTATTTTTTCATTTTTATTATAATGAACTCAGATAAAGTCACTATTGTTGCAGTGTTTTACCTAATTATAAATTAAAATTACCTGGTAAATACAATGTATACTTTAATAAAACATCAATGATTATTTCACAAGCTTTTATTTTTATGGGCAATGTTTTGCTTCACATGCTTTATATCCTGCTGCTTGTGCTTTTGATCTGCTCATAGCTGTTGAATTTTTCATTCCATGAGCATTTGCTGTATTATGATATATTCCTTTGCTAGATACATAAACTGTATCTGATGCATTCTTTACAACTCCACTTGAAACATCATTATTATCAATAGTTGAGGGTGTATTTACACTAGTATTTTGTATTTGAGCTGGAACACTTGTTGTCCATGCACCGTTGCTATTTAAATAATATCCTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //