Array 1 1815956-1814239 **** Predicted by CRISPRDetect 2.4 *** >NC_014228.1 Xenorhabdus nematophila ATCC 19061, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 1815955 29 100.0 32 ............................. CAAAGGTTAAGCTTAGGAAAATAAAACAAAAA 1815894 29 100.0 32 ............................. CCCGATTGTCATTCCTGCAACAGCATCCCTTA 1815833 29 96.6 32 ............................T GGTGGGCGACGCAGTCGTTCGACCGGAATGGC 1815772 29 100.0 32 ............................. AATTCGATAAGATGGATGTTGCTGTCCGTTTT 1815711 29 100.0 32 ............................. CTATTGCAAATACTCAATGAGGATGAAAAATT 1815650 29 100.0 32 ............................. AGAATGTCATTTAAATCTTTTGGTCTTGAGTT 1815589 29 100.0 32 ............................. CGTGTAGCATTTACTCTCTGATTTAGAAAGTT 1815528 29 100.0 32 ............................. GCCGCTATTGCGACCAAAAATTCAAATTATTT 1815467 29 100.0 32 ............................. GGGCAAAACGCATTTGCGTCGTAGAGGGGTTT 1815406 29 96.6 32 ............................C GCCGGGTTGCCCGTTTGCACGAACGTGCCGCC 1815345 29 100.0 32 ............................. TTGAAATTCCTGATGAGCTGGTGGAGGGGGTA 1815284 29 100.0 32 ............................. TAATGACATTTAATCAGGTTGAAAAAGTCAGG 1815223 29 96.6 30 ............................T TTAATGCCACCGGCGAATACGAAGAGGCCA 1815164 29 100.0 32 ............................. AGAAAATTTAGAGCGTTTGGCTGTGCTATATG 1815103 29 100.0 32 ............................. AAACTCTCACATAGTGTAAATCACGCGGACTG 1815042 29 100.0 32 ............................. CACAGGCAGGCAATCAACAACTCCCAAAACTC 1814981 29 100.0 32 ............................. ACACGGAACCGTCCCGCTGTTTTTTGCGGTTA 1814920 29 100.0 32 ............................. TACAGAATGAGTACAAATTAATATTTACTGTG 1814859 29 100.0 32 ............................. GCATCATCCAGCATGATCTGGGTGGCGGCCGG 1814798 29 100.0 33 ............................. CATTCCGCGCGTTAATGAAGTTCCTGATTTTCC 1814736 29 100.0 32 ............................. CCTTTAATAATTCCTGTTTTCCCTTTATCAAT 1814675 29 100.0 32 ............................. GCCAGATGGATGTTGTAGATGGAAAAGCAACA 1814614 29 100.0 32 ............................. GCCCAGCTGGCTGCCGCTCTGCCTAATCATAT 1814553 29 96.6 33 ............................A GAAAAAGCCCGGATAGGTGTGGCCAACAGAGCA 1814491 29 82.8 134 .................C...CG.G.G.. TGAACATTTTTTAAGCTTGAATTGTATGTTATGAAATCACATATCGGGCAAAAATACCTCAGAATGGTCTTGTTAAGGCATTGCTTAGTATTTTATTTGCTCTATTTGATCAAAAATAAGCCTTTCATGCTCTC A [1814473] 1814327 28 82.8 32 ACC..G..-.................... CTTACGGCGGTATTGCCAGCGGGGCGCAGATT 1814267 29 86.2 0 .............A.....A..C....T. | ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 27 29 97.7 36 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : AATAGCCAGTGGTCGTTTACTGCCATCCTCCTTCGGGATCTCCGTGATTCTGGCTGCTTTCGGGTGATACGTTCCTCTGCGTATCCGCAGGATAAGATTGTTAATATTATCATCAAGGTGTTCACCGTAAGTGGCCTTAGTTATGCGATCAATACCCACCGCTTTACTCCCGTCAAGCCGCAAGAATTGCTCTTTCAGCATATCAACATTCAGCAAATGTCCTAAGTTGTTGAACACCCGCTGCTTGTTATCTGCTGATTTCTTGCTTATATGAAAGCGTTCTCATTTTGGTTAAGGCTAACAGGTTATTTTGCGATTGCTGTGATAGGTGTCTTAGAATTTGATAAGCCAAAATGAAAAATATGAGTGAAATGCGATCTGCATTGCAGATAGTGATTCAGGAAAAATAAAAGAGATAATTTAACGGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAATTATCTTATAAAACAGATGGATAAAATTAGA # Right flank : CCACGCTGCATCTTGAAATCCATTGGATATAGAACTTTTTACCATATTTGAGGAAGATCGCAAAAATTACTCGTAATGTAGTTTAACTCCAAACTTCCTCATACAAGTTTGGGGCTAAACATTCAGGCTGTTAAAACAGAAAAAATAAAAACTACCCACGATAATACAATATTTAATAGCTTATTTATTTTAGCTAATCTGAACATTAAGGTGAAATATGATGATGGAAATACAATAATCATAAAACAAAAATACATCAAACTCATGTTTCTAGCACCGTAAAGAAATGGTAACAATAAAGTGATAAATGAGATAACTAACGCAGGTAACCATATGGCATAATATTCATCATCTTTACTTTCACAAGAAAATATACACAATACTAAAAAGAGATTGATTGTCGATATAATGGAAGTGCCATGAAAATAAAACCAGATGTAATCAGAGAGCTGGGTGTTCGGAATGATACGCTATATGCGCGAATACAAATATTACCTCAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3579108-3577918 **** Predicted by CRISPRDetect 2.4 *** >NC_014228.1 Xenorhabdus nematophila ATCC 19061, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3579107 29 100.0 32 ............................. CCATTTTATTTGAAAATAGGCAATGAAAAGCT 3579046 29 100.0 32 ............................. GATTGTTATCGAAAAACTGTTCAGGCAATGAT 3578985 29 100.0 32 ............................. AACGATGAGTTTGCCCCGCACGTTCTCAAAGG 3578924 29 100.0 32 ............................. GCACAGCGAAAAATCTGCTGGGGCAGACTGTT 3578863 29 100.0 32 ............................. GGTGATTTTTGACGGTTCAAACGCTTTCAGCT 3578802 29 100.0 32 ............................. ATAAAATACAGCTCCACTCCCTTGAGTTATCA 3578741 29 100.0 32 ............................. CCTGCCGATATTTATTACTGGCTTCATTGGGT 3578680 29 100.0 32 ............................. GTGATGCACCATCTACGTTTTTTTCTAAAATG 3578619 29 100.0 33 ............................. AAAAATTCACAGGTTAATATTTCATTTGATGTT 3578557 29 100.0 32 ............................. GCCACGCGGCGGGAGATTGCATTAACCGAATA 3578496 29 100.0 32 ............................. TGATATAGACAAAATCATTTTAGAAAAAAACG 3578435 29 100.0 32 ............................. CCTATGCGCCCACAGGCGGTAAAGATATTGAA 3578374 29 100.0 32 ............................. TAAACATAGAAACTCATCAGCTATGCTATATC 3578313 29 100.0 32 ............................. CCAATGAGGACACCGAAGAACTGGGCGAGACT 3578252 29 100.0 32 ............................. TCTATGATATTGCACAGCTTGATTCTGCGGCT 3578191 29 96.6 33 ............................T GATGATACGTAATGAAATGATTTGAGCTTTGAG 3578129 29 100.0 32 ............................. TGTTACTCAAACGGTCAGAACGGCGCAAGCTA 3578068 29 100.0 32 ............................. CCTCAGGTTCCGCGCTTTCCAAGATGTGACCA 3578007 29 100.0 32 ............................. ATAGCCTGTTTTTGACTGACTTACTTTGAGTA 3577946 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : TACTGAAAATATCTTTCAACGAAAAACAAAGAAGCAACTTCTATAAAATAGAATAGAACGGATTCCTAGATATGCAAACTTCTACATAAATTTATTTCCATTCGCGTATTTATCCCCGTACTTACGGGGAACATGGAGTTATAAACAAGGAAATTCAAAGTAGCCATGGTTTATTCCCGTATTAACGGGAAACATATACACATAATGAAGGAATGTGAATGTTCCAATTCTTTATCTTTCTTCTTAAGAAAAGTATATATCGAATTACTATCTTAGCCATATTTAACAGAAATAGTGATTTAGAGCGTGGTAAAGCACTGTAGGTATATCTCTGTTTACTATTCGTCACCTTTATATCTTTATGTAAGTGATCATAAGGAACCTAATAGTAGGTGATAGGTAAAAAATAAAAGGAATAATTTGGCTGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAAATATGTTATAAAACAGATGGATAAAATTAGA # Right flank : GAACGCCTGAATATCGTCAGCGCAGGAGACTTGTGAAGCGATGATGCCACGAAAAAAAGAAGTGACACGCCTTATATCGCCGCCCGCATTGGGCGACAGTTTTTGCTACAAAAAGAAAAATCCCCGAGTTCAAAACTCGGGGATTATAAATTCTGGCGGTGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCACCGCGTGGTGTTCTGGTTGAGAACGGGACGGATGATACGAGCTACAGTAAAATCCGTCAATCGCTTTTTATAACAAAATGGTTTGTTTGCGCAGTTTTTCGCCTCAACAATACATTTCCTTCCATTTTGTGACTATTTTGTTAGTGAATCTGTTCGGATTTCGGACGCCAAAGGCAACTCCCTCCTTTCTTCTCCACTAAGTCCAGGCGGGATTCATGCTGGGTTAATTCTTCATCAGATGCGTAAATCACTTTCAACCCAACCTGAGGACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3589391-3590273 **** Predicted by CRISPRDetect 2.4 *** >NC_014228.1 Xenorhabdus nematophila ATCC 19061, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3589391 29 100.0 32 ............................. AAAGTTTCAGCACCTATTAACGGAATTATTCT 3589452 29 100.0 32 ............................. AGCAGCTATCAGCGGGTATGAGGCAGGCGAGA 3589513 29 100.0 32 ............................. AATCCATTGTTGATAATGGCGCTGATTTCAAA 3589574 29 100.0 32 ............................. TCGGCGATTTCTGCGGGGGTGGCACTCTATTG 3589635 29 96.6 32 ............................C CGCGACAGAGCGATTACACTGAGGGAGGGGGC 3589696 29 100.0 32 ............................. AATGACTCACCTCAGCTTTGCCATTACAGGTC 3589757 29 100.0 32 ............................. TGGCCTGTGAAAGTGGATGCAGGAAAAACTAA 3589818 29 100.0 32 ............................. AACATATTCAGAAAATGGCATGTCAATTATCA 3589879 29 100.0 32 ............................. ATTTTTCGCCTGTACGTCGTAAAACTGCTCAA 3589940 29 100.0 32 ............................. GGATAGATCCTCGTAACTTGGATGACCCCACA 3590001 29 100.0 32 ............................. GTAACGCAGACAAAAACCTACATCGACAAAGC 3590062 29 100.0 32 ............................. CGTGACGATGTTATCTGAAAATATTAATGAAC 3590123 29 93.1 32 ............CC............... CCATATCTGGTTATCGAAGTCAATCTCATCCC 3590184 29 93.1 32 ............CC............... GATATTATCGACGCAGCGAATGATTTAACCGA 3590245 29 93.1 0 ...........G.A............... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Left flank : CCTGATTGAAGAAATCCTTGCCGCCGGCGAAATCTCACCGCCACCACCGCCTGCTGATGCCCAACCGCCTGCCATTCCCGAACCTATATCCATCGGTGATATAGGTCACAGGAGCCAGTAAAAATGAGTATGACGGTTGTTGTGACAGAAGCTGTTCCGCCCCGGTTGCGGGGACGTTTGGCCATTTGGTTACTGGAGATACGCGCCGGGGTTTATGTCGGGGATATCTCGCATAAAATCAGGGAGATGATTTGGGAACAAATCACAGAACAGACCGAAGATGGCAATGCAGTTATGGCCTGGAAAACCAACACTGAATCAGGCTTTGATTTCCAGACCTTTGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTTCGTTTAGTGAAGTTTAAACCACTTGCTGAGGAGTAGCTTAGAGAGATTAAAAACTACTTAAAGTCGGTAGAATTTATACCGGCAATAAAGAAGATTAAAAACAATTGGTTATATTTAGG # Right flank : GTGGTTTATGACACAACAAGATGAAGAAGATACGATTCCCCCGTAAATACGGGGAAATCCCCCTCAACTTGTCACACAAAAAAGCATAAGCATAAGCATAATTACTTATTTGAAAAGATAACCGAAATAACATAAAAATCACCAAAAAGTATTTTGGTAGTCATTTATTTTGATTTAGTCAATATAAAAACAAAAATAAAAGTTCATCTGAGCTAAATTTATTTTTTACAATCAGAATATATCGAGATAAAAAGTAACATCAAAATAATGACAGTATAAAATGGTGATATTTATTAACATATAAGGAAAATAAAACGCATTTTTTTGATGATAAAACCAACGAAAACTCTAAATTTTGCCACAAACGCTTCCCAAGCATCATTCGTTAATGATTGTCAAAAATACCTATGCTAACCTACGCCGCTTTTCATCCCCCTTGCTGTTGATTTTATAAGCAATTATCTGTCGGAAATAGGAAGCGAATTAACTTATGAACTTAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTCTCCGTAGGTACGGAGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGGTCTCCGTAGGTACGGAGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //