Array 1 4218-4992 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGQU01000142.1 Azospirillum sp. TSH20 Contig98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4218 37 100.0 36 ..................................... TCAGATCCGAGCGCTCCTTCGCCAGCTTACTGGCCG 4291 37 100.0 36 ..................................... CAATGGGTTGGCCGACGCGCCCGCCCCGTCGACGTC 4364 37 100.0 38 ..................................... CCGACCCACTATGCGGAGGACTTACCCGGCGCCACCGC 4439 37 100.0 38 ..................................... CGCTGTAAACCGCCACCATGACGCCCAGCGCAGCGTTA 4514 37 100.0 35 ..................................... AGCTCCAACTACACACTCTACGGCGACATGTCCGC 4586 37 100.0 36 ..................................... CCCGCAATGGGCGGTGGAGGCCGCAGTAAAGGAATG 4659 37 100.0 38 ..................................... AAGCGCAGGTCCAGACGCTGACGCAGATGCTGGCGACG 4734 37 100.0 38 ..................................... GAGTCCTACGACGGCATCGCCATCATCCGCATCGAGGG 4809 37 100.0 38 ..................................... CCCTGGACGTTCGGATCAGTCTCTTCGGTCTCGGTCGG 4884 37 97.3 35 ...................................A. TCGTCGCGGTGAAAGAGCCGGTACTCCGCCAACCA 4956 36 81.1 0 ........A....-....T........C...G..C.T | C [4977] ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.0 37 GTCTTCCCGGGCAGAAATGCTCGGGCCTCATTGAAGC # Left flank : GATGCGTGTCGTTGATGTAGCGGGACAGCGATTCGCCGGAATCGGGCGAACGGAGGGCAATGGCGGTGCTCATGTCACATCCTCGTGCAAAGCGATATGACGGGTGCAAGGCCCCCAAATGGCAGGCCCTGGCCTCTCCGGCGGAGCAGGCGGTGATATAGTACAAAATCGGTGCTGAAAGTCAAGCGTGGTGGTCGGGTTATGGAACACGGGTATGGGTTGGAGGCGGGCGTGGTGGGGGCCAGTCTGAGGACGATGCTGGTGAGCCCCCTCAACCTGTGCTACCTTTGTTCCGCTGCCCACGTCTCCTTGCGAGCGCTGGGACGCACGCGAATCCCCGTCTACCGCTCGCATCAGGCGATCATATTGATTTCGCGAGGTTCTTTGACAAGGTGAAGAACGAAACGGAACCGGCAAATCCTGACCGACCGGTCAGGAACACGGACCCCTCGCAAACGTGGCGAATCCACATTGCCTTTCAGTGGGCTACGGGGTAGGGA # Right flank : TACACACATGAACCCGGCGTCGTTGCTCTGATCGGGTATCGCGGCAAACCCCCGGGATGGAGGCGCCGGCCAGCGCTAATTCTATTGCTCGGCAGGGGTGGGGCGCTTACGGTCGCATGTCGCACCATATGAGTAAATCCCAGCCCGGTCCCCCTGCCCAGATGCCGCGTCCCGTTATCCGCCGCCTGATCGATGCCGTGCCGACCGCCGTCCTGCCGATGGCGGCCGGGGTGGGGCTGTCGGCGCTGGTGGCGCCGCAGCCGGATGCCGCCATGGCGCTGCTGCGCGGGCTGGTGGTCACGCTTCTGCTCACCCTTCCGTCGCTGGCGGTCGGCACCGCGCTGGGCACGCTGGCCGGATCCTGGGCGGCGGTGGCGCCGCGGTCGGCCGGCGGGCTGGTCGGGCGGCTGCTGGCCGGGGCCGGGCCGCTGTTGCCGGGATTCCTGCTGGCCGCCGTCGCGGCGCTCGCGGTGCGGGCGGGGGCGTCGGCGGCGCCGCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGGCAGAAATGCTCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.20,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 55546-56778 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGQU01000064.1 Azospirillum sp. TSH20 Contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 55546 37 100.0 39 ..................................... ATGATTCGGCGCTGCAGGAATTGGGGCATGGGTCGCGCC 55622 37 100.0 37 ..................................... ACATCGGCGGCCGGCGCCTGCGCGCGCTGGAGAAGCT 55696 37 100.0 37 ..................................... AGTTGGACGCGCCGGCAGTAGTGCAGGTCGACCGGGA 55770 37 100.0 35 ..................................... TCCTTGGGCGCATCCCGCCCGAACTGCCGCTCGCC 55842 37 100.0 41 ..................................... GGGACTTCCTTCCTGCGCTGCTGAGCCATCGCCACCCCCCA 55920 37 100.0 38 ..................................... GTCTTGCCGCGCGGAAACAGCATGGTGTCCGCCTTCGT 55995 37 100.0 36 ..................................... CGGGTGATGCCGTCGTATCCGGTCATGCCGTACCAA 56068 37 100.0 37 ..................................... AACCGGCGCGAGGCGGTGGTCAAGGAAGGCGAGCGGC 56142 37 100.0 35 ..................................... TCGGGATCGCCGGTGGTGCCGTCGGTCTGCCACTT 56214 37 100.0 41 ..................................... GGACCACGCGCCATGAGGCCACAGCCGGCGGGAATGTCCTG 56292 37 100.0 39 ..................................... GACCATACCTTCGCGGTGTACCGACCGTCGGCGACGAGG 56368 37 100.0 35 ..................................... TCCGGGCCGCATACGATCATCGACGGGGTGACGTT 56440 37 100.0 36 ..................................... ATAGAACAGGGCGTTGCGGAGCGTCCCGGCGGCGTC 56513 37 100.0 40 ..................................... AGCACGTCGGTGGACGACAGGTCTCCATCACCGCGGCCGG 56590 37 100.0 39 ..................................... GACATCTGGCGGCCGAGCTACGGCGCCGCGGTGGTGACC 56666 37 100.0 39 ..................................... ACCCCGGCCTTCGCGCGGAGGATCGAGCCGGCGACAAGA 56742 37 97.3 0 ...................................A. | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 99.8 38 GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Left flank : CCATCCTCGGCCGTCCCGAGCCGGAGCGCGTCGGCACCGCCACCCGCGCCCTTCTCGGCCGCCTGTCCGGCCCCTTGCCCGCGGATGCCAGCCTGTGGTGGACCCGCGGCGCCGGCCGCATCGCCCCGTCCCTGCTGTCCTGCCCCGGCCTCCCCGCCGCCCCCCGCCCGACCGCCTTCCTCGACGGCGCCTGGACCCGCTGGGGCTGGGAGAATACGGAGGAGGGGTAAGGGGGTCGGGAGAGGGCGGCCAGCCCCCTGCGATGGCATTGCCCCCCACCCCATGCTATCCTTCCCACCGCCGCCCCGCCGCCGCGAGCGGTCCGGCACAGGCGAAACCCCCGTCACCGCTCGCAAGGGCGGAGTCGTTGTTTTTCCTGGGTTCTTTGACATCGTTCAGAACGAAAACGGACCCAAAGACCTGACCGAGCCGACAGAGTCCCTCACCGCTCGATTCCAGGGCGAATCGCTGTGGACTTTGAACGGTTTGAGGGCAAGGCA # Right flank : CAGCTCGTTGTGATCGTCGGTGATGCCGAACAGCCTTTTCACTCCCGGCATTACGGCCCGATCCCTTGGCGAAGGCATTCACCCACGGCTTTCCACCGGAACTGCGCGGGCCGCGCTGGTCTGAAGCCATCCGTCGTGATAGGACTGCGTACCCATCTCCAATCCCGGAGGCCGTACATGAGGCCTGTCGTCCGCTTTTCGTCCTGCCCGCTTCACTGCCGGATCGGCGTGCGGCTCCGGGATATCGGGCCTTGCTGGCCGTCGGGCGGCAGGTCCTGCAACACCACCCGCCCGGTCCGGTGTTCCATCCGCCGCGCCATTCCGGGGCTCCGACGGCGGCCCGCCCCCCTTGTCCGCTCCGTTGAACGGATGAACAGGGTGCCGGAGTCTGTTTCACGCTGTTCCAACCCGCGCAACCCGCCCGCCGCTTCCCATCGCCGCGGGCGGGCGTCCGGCCGGGCGTTACCGCACCCCCGCCATCTCGCGGTCGAACCGCGCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.20,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //