Array 1 138574-136532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJDYK010000003.1 Corynebacterium diphtheriae isolate YEM0044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 138573 29 96.6 32 ............................G TTCCGTAGTCACCTAGTACAGGTACTGCGGCC 138512 29 100.0 32 ............................. ATCATTCCCACAGCTAAACGGCTTGCCAAAAT 138451 29 96.6 32 ............................G GACGAGTCCATCTCTGCCGAAAACGTGATCGC 138390 29 100.0 32 ............................. GATTGGATTAAGCCGGATCATCTTCACCTCCT 138329 29 96.6 32 ............................T GATTGAGCTTGTCACATTCGGCGTCGAACCGA 138268 29 100.0 32 ............................. GTAAAGGTATGTTGGGGCAAAGTAGATTTCCC 138207 29 100.0 32 ............................. CATCTGCCATTTTGTCAAATCTTTTTGGAAAA 138146 29 100.0 32 ............................. TTTTGGCCCTGTGGAGCCGTAGGTTCGTGCGA 138085 29 96.6 32 ............................G TCTCCTTGATCTTGCCAGGCATTTCCTTAACC 138024 29 100.0 32 ............................. GGAGGTAGCCGCCGATTCTGCTAGCTTTTTTA 137963 29 100.0 32 ............................. CTGTCTACCGTTGTTGGCTCACCCATAACTAG 137902 29 96.6 32 ............................G AAGAACAAACGGAACTCGCCGATTCCCTCGGA 137841 29 100.0 32 ............................. ACCACCCCAGTTGTAGCGCGCACCCTCAAGAG 137780 29 100.0 32 ............................. ACGCCACGACATGGTGGAGCCACCGTGGGAGG 137719 29 96.6 32 ............................G AAAAGCCCCCACAGGGTGGAGGCTCAAACAGA 137658 29 96.6 32 ............................T AAGGTGCGAATACATAATCCTGGTATCAGGGA 137597 29 100.0 32 ............................. TTGAGCTGGGGGCCTAGCAATGATCGGCAAAA 137536 29 100.0 32 ............................. GATCAACGCGACGGCGCGACTACCACGGGTAG 137475 29 96.6 32 ............................G CACGCGATGGATTCGGCGCGGCTTGCTGCGGA 137414 29 100.0 32 ............................. GATCGGTTGGGCGTATCAAGATGTTCTTTGAT 137353 29 96.6 32 ............................T GCTCTTTCGAGTTTCAGCAAGCCCTTTCTCCG 137292 29 100.0 32 ............................. CAAGTGGCTATCGGTATCGAGGCGGCATCTAG 137231 29 96.6 32 ............................T TTTCCGTGAGCATCATAGACCGTCAATCCCAG 137170 29 100.0 32 ............................. CACAGACGATGCGACTTCCTCAATCGAGAAAA 137109 29 100.0 32 ............................. CCTAATTTGGTGTGTGACCCTAGTGATGGGAA 137048 29 100.0 32 ............................. AACATGTTTGACACGGAGGGCAAAATGGACAC 136987 29 96.6 32 ............................T CATGAACGGATATGAAAAATGCGGTTGGTAAA 136926 29 96.6 32 ............................G GCTCGGATACCGTCGATAAGCTGCCGGACGCC 136865 29 100.0 32 ............................. TCCCAGCACTCCTCCATCGCTTTCCGCTCCGA 136804 29 100.0 32 ............................. ATGAAAACATGCTCAAAACTTGACACAGGACG 136743 29 100.0 32 ............................. TGTGGCTGCCCAGATGGGACAAAGTCTGATCG 136682 29 96.6 32 ............................G ACTCGCCCTACATAATCGGGGTATCAATACTG 136621 29 96.6 32 ............................G CGCTACGTTGACCTATCGAGGCCTTCCTCTGT 136560 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 98.6 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAAATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGTAGAAAAATTGCTGAAACAAAGTTATATGTAGTAAGTTCTAACTGTCTCTAAACATGCAGCTTGATAAGT # Right flank : AAAGCGCGGATGGCGTCGATGTATTTGCGTCAGCAATATGACGCGAATATGTCGAAGCAAGGCAGATACATGCGGACTGATCGGCCGCGATTGATGCCGGAAGAAATCTACAAGATTGCAGGTGGCGACCGAGATATTGCGGTCTCATTGCTGCACAAGAACGGTTTCTTCTTGGATGCCTCGCCAACATTGGATTCGAAGCTTAGTTTTTTTACACGGGACAAAGTCGTGAAAGAAGCGATGGAGAGCGCTCGTGTGAAGTTGAAAGCACGGTATGGCAAAGAGTTAAAGCGTGAGGCGATTAAAATTGGTAGTGGTGATCCTCCGAGCGAACCGCCACGATGGTCGAAAAATGGCGGTGGTGATGATGAGATTCGGAGGCGGTATTTCGAGGATTTGCGTACAGCGGATAAACGCGTGCCAATTGAACACATCGTTACCGGGAAGGTGCATAAGAACGTTATCCAAGGTGCCCATGATCATTCCAGACGTTCATGGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //