Array 1 11082-16184 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWAD01000026.1 Bacteroides faecis strain BIOML-A5 scaffold26_size81756, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 11082 47 100.0 29 ............................................... TTCTTCAATTGTACCGTCTAAGTCTATCA 11158 47 100.0 30 ............................................... TATTCAAGAAAAACTTGAATTAGCTTATCA 11235 47 100.0 30 ............................................... CTTTCCTGATGTGTCCAGACCGCCGATATA 11312 47 100.0 30 ............................................... TAGACGAATGGAATGAGAATCTTGTTCCTA 11389 47 100.0 29 ............................................... CTAAGAAAACCACAAAGGATGATAAAGGT 11465 47 100.0 30 ............................................... ACGAGCCTTTCGGGCGCTGTGAGCGCTGCA 11542 47 100.0 30 ............................................... TCCGTACAGGTTTGGGAGAGGCTGAATATC 11619 47 100.0 29 ............................................... GAGTAATAGCATTCATGTCAATATCACGA 11695 47 100.0 30 ............................................... AAGCCGAGGTCTGAACAGGACGAGTACGGG 11772 47 100.0 29 ............................................... CATATTTTAGGAATACATTTGTGATAGCT 11848 47 100.0 30 ............................................... TGTTATCTTTTTGATTACGCTACAAATTTA 11925 47 100.0 30 ............................................... GCATTGATGCATAGATAAATATAGGTATTA 12002 47 100.0 29 ............................................... GGTATCAAGATTACGAACCACCTTAATGT 12078 47 100.0 30 ............................................... CAGATGCGACAAAAGCAACAATAACACTCA 12155 47 100.0 29 ............................................... AAATTATGGCAGTTGTAAGAACCTTAGGT 12231 47 100.0 29 ............................................... TCCTCAGATTCTTAAACTCGCAACAACAG 12307 47 100.0 29 ............................................... TCGTGTCTACACCATACAGGGAGCGATAG 12383 47 100.0 29 ............................................... CAGATGCAGACGGGAAAGATACACCTATC 12459 47 100.0 30 ............................................... TCACCTGTTTCCTTATCTACAAGATCATTA 12536 47 100.0 29 ............................................... ATATGTAAGAGTAACGAAATAACAATACT 12612 47 100.0 30 ............................................... TCTTTAGAGACCAAGAATCAGTATATTGTT 12689 47 100.0 30 ............................................... TTTCCACGTCATATCTTCTGTTTAGTACCA 12766 47 100.0 30 ............................................... CATTTCCAGCAGAATAATAAAGAGCCAACG 12843 47 100.0 29 ............................................... ACGCCTGATCGTCTTTCTTCGACTCCACA 12919 47 100.0 30 ............................................... TTTAGGAAAAAATACACTAGGCGACAATGG 12996 47 100.0 30 ............................................... CTGAAGTAATTTCAAAATCAGCAACAGATA 13073 47 100.0 29 ............................................... TGTCCTATCGTCGAAAACAAAGAGCTAGA 13149 47 100.0 30 ............................................... AAGCAGCCGTCTGTACAGGACGAGTCCGAG 13226 47 100.0 29 ............................................... TATATATGACAAGGGTAGAGAGTAATTAC 13302 47 100.0 29 ............................................... GCATAATCAAAAAGGCGAATACTAACAGC 13378 47 100.0 30 ............................................... CCTAACGGAACATTTCCTCCGGAAAAATAA 13455 47 100.0 30 ............................................... TAAGGAAACGAAGGCTGAATGAAAAGTCGG 13532 47 100.0 30 ............................................... TTCGTTTTCGTTCCTTTGATGATGAGCCTC 13609 47 100.0 29 ............................................... TTTCCTCCGGAAAAATAACAAGACCAAGA 13685 47 100.0 29 ............................................... ACGTACGAGATCAGATAATCGAAAACCAT 13761 47 100.0 30 ............................................... GCAATCCCATGATAATACTTTCTTCATCGC 13838 47 100.0 30 ............................................... CCTTCGGCGATACTAAGGTGCTAACGCTCT 13915 47 100.0 29 ............................................... ATAGATGAAACTTGGTTTAAGATTAAGGA 13991 47 100.0 30 ............................................... AGGCAGCAGACGCTGAATACAAACGAAATC 14068 47 100.0 30 ............................................... GAATTGCTGAAATAATCCTTGCGATAGTAT 14145 47 100.0 30 ............................................... AGAAAAGGAGGAATAAATTATGACAGTGGT 14222 47 100.0 30 ............................................... TTATTGCCGGTAGCAATGAAATTGCGTTTA 14299 47 100.0 30 ............................................... AAGTATTGTTTCTTCGTCACCCTTACATAT 14376 47 100.0 29 ............................................... AACAAGCATAGAATTCAAAAAAGACATCG 14452 47 100.0 30 ............................................... AACATTCCCGTTATTGTCAAAGTGGACTTA 14529 47 100.0 30 ............................................... CTACGAACACTATATGCGAAAAGGGCGGAT 14606 47 100.0 30 ............................................... TGACGGATCACAAGATAACGAGATAATCAC 14683 47 100.0 30 ............................................... TAGGGTCATTTGATGAATCGAGCAATTGGT 14760 47 100.0 30 ............................................... CAACATGCTGAACAGGATCGCAGTATCGGG 14837 47 100.0 30 ............................................... AATAGAAGCGCAAAACAAGCTCGCAAACGC 14914 47 100.0 30 ............................................... AAAAAAGCGATCAATCGAATGAATAAACTA 14991 47 100.0 29 ............................................... TTAGGAAAAAACACACTGGGCGACAACAA 15067 47 100.0 29 ............................................... CTACACAATAACCGGACAGGTATCGGTAT 15143 47 100.0 29 ............................................... ATTTCTTAATCGAAGTTTCAAGGTTAGCT 15219 47 100.0 29 ............................................... AAACCAAATTGTTTAACGATGGATAAAAA 15295 47 100.0 29 ............................................... CAGGAGCAAGTGCAACAACAGGTGTGTAC 15371 47 100.0 30 ............................................... AACGCACGGAGAAACAAGGTGGCAGCTAAC 15448 47 100.0 30 ............................................... GAAGGAGCACCATTACACGGTGACGTAGAG 15525 47 100.0 30 ............................................... AAAAATACAAAAGATAATGCGTATCAGATG 15602 47 100.0 29 ............................................... CGTAAATTATCATTTGTAAGCCGCCAGCG 15678 47 100.0 30 ............................................... GTATCAGGAATACATGCGTTTGGTTCGTGA 15755 47 100.0 30 ............................................... GGCAACGAGAAGAGGTAACTATAGCGCTAA 15832 47 100.0 29 ............................................... AGCGACATCAAACTACCTATGATGTATGT 15908 47 100.0 30 ............................................... CGACGGAAGTCAAGACAACGAGATAATCAC 15985 47 100.0 30 ............................................... GGAGGATTATTCAAAGGCGATGATGGATTA 16062 47 100.0 29 ............................................... TTAGGAAAAAACACACTGGGCGACAATAA 16138 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 67 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : TAAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCGCCATCTCTTTTTTTACGCAACTTGCTTT # Right flank : CAGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAAGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 64337-67067 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWAD01000014.1 Bacteroides faecis strain BIOML-A5 scaffold14_size124321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 64337 45 87.2 30 ...A.-...AA....-T.............................. TTACGTTATCGGTGAAAATTACGAGATGCA C [64346] 64413 47 100.0 29 ............................................... GCAAATGCAGATAAAGCAGTCGAAGATTG 64489 47 100.0 30 ............................................... TCCTTGTACAGCGTGTACAATTCCTCGCCA 64566 47 100.0 29 ............................................... AAAAAAGAAAAATAAACTATGGCAATCGT 64642 47 100.0 30 ............................................... CAGAGTTGTACAATGTCACTCAGTGTGAGT 64719 47 100.0 30 ............................................... GACGAATCCGATAACTGGCAAAGCTATTGG 64796 47 100.0 29 ............................................... TGTATCTGAACATGCAAAAAAACACAATA 64872 47 100.0 30 ............................................... TACACAATGTGGTTTGCAGCAACAACAAGA 64949 47 100.0 30 ............................................... TCGCTCTCGGAGAGACTGCGTGAACGCAAA 65026 47 100.0 30 ............................................... CCTTTCCACAATGCACGAAGTGGATACTTA 65103 47 100.0 30 ............................................... AGACCCGTATGAAGGCTCGTGTAATGTTCT 65180 47 100.0 30 ............................................... CAACCGTACATTCGGAGATTTTGCAGTAGG 65257 47 100.0 30 ............................................... TAACAACTGGGTGAAAACCGATTGGATAGA 65334 47 100.0 29 ............................................... AAAAAGGAGGAATAAACTATGGCAATCGT 65410 47 100.0 30 ............................................... ATTATCAATGCGAAGAACCAGGATACATCA 65487 47 100.0 29 ............................................... GCAGCAGACGCTGAATATAAACGAAATCT 65563 47 100.0 30 ............................................... GACGAATCCGATAACTGGCAACTCTATTGG 65640 47 100.0 30 ............................................... AAAGTTCTACATGATAAGAGGAGGATTATC 65717 47 100.0 30 ............................................... TCGAGCTCTGGAATCAAGAAATGCTGAACA 65794 47 100.0 30 ............................................... CTTATTTGATCACTTAATTCCAGAGTTGTC 65871 47 100.0 30 ............................................... CAGAGATGTAATCTTACACAAGAAAGGCAA 65948 47 100.0 30 ............................................... ATAGCGTTATTGCAAAAAGAAGGAGCCGTA 66025 47 100.0 29 ............................................... TACGAGATGATAACAAGAAGAATGTCAGT 66101 47 100.0 30 ............................................... TCTTCTGTCATGGGTACTTTAAATGTACAT 66178 47 100.0 29 ............................................... AGCGACATCAAATTACCTATGATGTACGT 66254 47 100.0 30 ............................................... CTCTACTCAAGAGACTGGAAAAAGTAATTA 66331 47 100.0 29 ............................................... CGCAGTACGCATATAGCATATTATATCAA 66407 47 100.0 29 ............................................... TCCAGTTAATTATATCCTTACCATATACA 66483 47 100.0 30 ............................................... AAAGCAGGGCTAAGCGTAGGTCTTATGTAC 66560 47 100.0 30 ............................................... CAAACCTTACTTAAACATTTCTTTTCCATA 66637 47 100.0 30 ............................................... GCAGGCTCATAAACAACAACAAGGAGGCTA 66714 47 100.0 30 ............................................... TGTGATATCTGTAAGATTTGCCGTCAAACA 66791 47 100.0 30 ............................................... ATCACGTTCCCAATTAGCATAATGAAGCTC 66868 47 100.0 30 ............................................... CAAAAACAAACATATCAAGCAGCGCGTTGT 66945 47 100.0 29 ............................................... TATAAATATCTAGGCTTTAGCGAATCAAG 67021 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 36 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GTTCACAAGTTACATAGGTGGGGATTCCATAGTTGGCGATCTCCTGCATAGCAGCCGCACGTTCTTGAGGTACCAGAGTATTCCGCATTATATCCGGATAAAAACGGTTCGTCTCAATGGTCGTACAAAGAACGGATTTCTTCATAACCGGATGCTCCAGATATTTCAGAAAACGGGCGGGATTCTTTGACTGGAAGAGATACTTGTTATCAAAACCGTCACAATAGTCCAGTATCTGCTCAATCCATTCTGACGGGACATTAGCCGCCCATTCATCCGTACTGCTGCCTACAAAGATAAAGTTGCCTTCACCCAGATTCACTTTCAGTTCCTTCAGCTCCAGACGCAAGGGAGGCAGGAGAAGTTTACGTCTCATAAAACAATATGAACAAGAGTGTTCACATTCGCCTTTCATCGGGTTATATGTATGTGAAACGAAGGCATACATGTTCCCGGTACTTTTATTCAGTGCCATATATCATTATGCTTTTCACATCCAT # Right flank : CATATTTTATATAACAAAATGATTTCCAACAAGTTAAAAAGAAAATTAGAAAAGAAAAAAAGTCTGTTTCCAGCACAAAATCTCGCATTAATGCGAGATTTTGTTTTTTAAAATAACTCTAATTGTTGTCCAGGCGTATTAACATTCTGCATTTTCTTTCCATAAAAAAGTTCTATATTACCAAACTGTTTATCGGTAATACACATGATTCCTACATGTCCAAACTCCGGGAGGAAAGATTTAACTCTTTTTATATGTACTGTAGCATTTTCACTACTAGCACAGTGACGCACATAAATGGAAAATTGAAACATAGTAAAACCATCCTTTTGCAGATTCTTTCTAAAGTCCGCATAAGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAAAACAAGTACCCACATAATACGATATTCACTAAAGCGATCCATTATCGTTCAGGATAAGCTATTCGACGAATTTCTCCATTGAAACATTTGTAAAGTGAGGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //