Array 1 7841-5227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJCX01000002.1 Listeria monocytogenes strain CFSAN002309 PROKKA_contig000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7840 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7774 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7708 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7642 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7576 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7510 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7444 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7378 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7311 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7245 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7179 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7113 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7047 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 6981 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6915 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6849 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6783 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6717 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6651 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6585 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6519 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6453 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6387 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6321 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6255 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6189 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6123 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6057 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 5991 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 5925 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 5859 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5793 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5727 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5661 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5595 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5529 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5463 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5397 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5331 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5265 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5230,5233,5238] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //