Array 1 44887-47567 **** Predicted by CRISPRDetect 2.4 *** >NZ_AARR02000019.1 Listeria monocytogenes FSL R2-503 cont3.19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44887 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 44953 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 45019 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 45085 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 45151 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 45217 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 45283 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 45349 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 45415 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 45481 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 45547 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 45613 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 45679 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 45746 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 45812 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 45878 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 45944 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 46010 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 46076 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 46142 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 46208 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 46274 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 46340 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 46406 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 46472 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 46538 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 46604 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 46670 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 46736 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 46802 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 46868 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 46934 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 47000 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 47066 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 47132 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 47198 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 47264 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 47331 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 47397 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 47463 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 47529 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [47554,47560,47563] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49328-50656 **** Predicted by CRISPRDetect 2.4 *** >NZ_AARR02000014.1 Listeria monocytogenes FSL R2-503 cont3.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49328 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49394 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49459 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49523 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49589 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49601] 49657 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49722 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49787 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49853 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49917 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 49982 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50047 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50112 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50175 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50238 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50304 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50367 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50432 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50498 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50563 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50627 29 93.1 0 .......................A....C | C [50650] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //