Array 1 2307823-2309346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029702.1 Akkermansia muciniphila strain EB-AMDK-41 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2307823 31 100.0 34 ............................... CAAACGGTGAAACCTTTATAGAACAAACACGTGA 2307888 31 100.0 34 ............................... TTAAACTCAAGGTTTTCCCCTTCGAGCGTGTAGA 2307953 31 100.0 33 ............................... GATTGTGGCGTACTTAACGCCAATATGCTCCGG 2308017 31 100.0 34 ............................... ATTGTATTATGTGGTTAGGTTTATTTATTGTGCC 2308082 31 100.0 34 ............................... CGGATTGGATTCAGGCCGTCCCGTAGGGGAAGCT 2308147 31 100.0 34 ............................... TGGCGCGTTTCGGTCAGGTTGATCTGGTAGCGCA 2308212 31 100.0 34 ............................... TTTTCCTTATCGTTTCTCACAAACCCTTCCGGCA 2308277 31 100.0 33 ............................... TGAAGGTGTGCCGCAAGCGAAACAATACAATAA 2308341 31 100.0 34 ............................... TTGAACTTCGCAAGGTCCGAGTTGGTGATACGGG 2308406 31 100.0 34 ............................... ACGGCATCTGCCTGTTCCCCGTTTTGCCGGAGGA 2308471 31 100.0 34 ............................... TCTCCATGGCGTTGCCAAGAACATTTTTCAGGAA 2308536 31 100.0 34 ............................... TAATCATATCCCTACTACAACGGTAGGAATTAGA 2308601 31 100.0 34 ............................... TGTACTCCAATTTCAGGGAGGATGTAGTTAACGT 2308666 31 100.0 34 ............................... AATCGCTTTCCCGCCTTTGGCCTTGCTTGCTCGA 2308731 31 100.0 34 ............................... TTGCAAATATAGATAAAGATTAACTATGAATAAG 2308796 31 100.0 34 ............................... AAGGAGCTTTTGTTGGTCCTTGTGGAGGGCAAAT 2308861 31 100.0 34 ............................... ATATCCAGGTGCCCGCGGATGCTCTCCGCCCCGG 2308926 31 100.0 34 ............................... GAGAAAGTCACCCTTGCGGGTATTTGCTCCGGCT 2308991 31 100.0 34 ............................... ACAGGCCCGGCGCTGGAACGGCTCATTGACTACC 2309056 31 100.0 34 ............................... CACAGAGTGGATATTATAGATATAAAAGTATTAG 2309121 31 100.0 33 ............................... TCTTGTTACCTAAGAGGCCCCTACTATGGCACA 2309185 31 100.0 34 ............................... CGATAAAAAACAGATACTTTCCGTGTTACTGCAA 2309250 31 96.8 34 ........T...................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2309315 31 83.9 0 ....T................A..A....TA | G [2309328] ========== ====== ====== ====== =============================== ================================== ================== 24 31 99.2 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGTAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTTAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2508022-2512663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029702.1 Akkermansia muciniphila strain EB-AMDK-41 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2508022 31 100.0 33 ............................... ACCTGCGGCTATCCGCTAGACCTGCTGGACTAT 2508086 31 100.0 34 ............................... TTAAACTCAAGGTTTTCCCCTTCGAGCGCGTAGA 2508151 31 100.0 35 ............................... ATATACCCAGGAAGAACATAATATTTTACACAGTC 2508217 31 100.0 35 ............................... GGTAAGGGTTACCAACATGACGGGAAGGGTTTCTT 2508283 31 100.0 35 ............................... ATGAATCTCCTGCGCGTCCGGGTAGTAGTCATAGG 2508349 31 100.0 34 ............................... CTTCGGGGAACAAGGCCAATTTAGCATAGGTGTG 2508414 31 100.0 34 ............................... CGCAATGCGGGCAACGGCCATTTACGGGGGTTAC 2508479 31 100.0 34 ............................... GTCATGATGGATAGTGAGCAGAGCAAGAAAGCCT 2508544 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 2508609 31 100.0 34 ............................... CGGCTCGCAGAATATAGGCTGGAGTTGCCCGTTG 2508674 31 100.0 34 ............................... CCGTGGGAGTGCTCCAACTGCTTACGGGTACAGG 2508739 31 100.0 35 ............................... AAGACTTGTCGCAAAGGCTTTTTGTGAAGTTTCAG 2508805 31 100.0 32 ............................... CTGATAGGCTACCGCAACACTTGCCTAAATCC 2508868 31 100.0 34 ............................... TGGCAAAACAGGTGCCAGTGTATATTTATGTGCC 2508933 31 100.0 35 ............................... CAAAATTTCCCCCATACAGCGGGCCGTATGAGGAA 2508999 31 100.0 33 ............................... CACGGAGGTGGGTTGAGAGAACTGGCTCTTGTC 2509063 31 100.0 34 ............................... GACGACGTGCTTAGTGCCGCCACCAAGATTGCTA 2509128 31 100.0 33 ............................... TGACCAAGCATGAACATCTTCTTTACACCGCGG 2509192 31 100.0 34 ............................... ACCGTTAATGGTATTGTTCACCCATTCGGGAGCA 2509257 31 100.0 34 ............................... TGGACAATAGCGGTAATCTTAGCGTTAGCCTTAT 2509322 31 100.0 34 ............................... ATGTCTCCATGCCGCATGGCCCAGGCACCATCCC 2509387 31 100.0 33 ............................... GAAGGTCTTTAGCGATTGCTTTGCCATCTAAGA 2509451 31 100.0 34 ............................... ATCATAGAGTTATCTTGCTTGTGTCAAGTTTGTT 2509516 31 100.0 34 ............................... TATTTGTTAAGGTTATAGGGGAGATTGAAAAATG 2509581 31 100.0 33 ............................... GGTGAAAGAATGGGGGTTACAAGCTCTCCTTCT 2509645 31 100.0 34 ............................... AAACTACGGAACTGATTGCGTAACAGTTTGAGCA 2509710 31 100.0 34 ............................... AGGCCAGAGGTAGGCACGATGTCAGCGACAGGGG 2509775 31 100.0 34 ............................... CACCTGGGCATTACACGGACCAGAGTAGCTGTCA 2509840 31 100.0 36 ............................... TCTATCCACGGGGTCCACGTAATCGGCGTAGGACTG 2509907 31 100.0 33 ............................... TACAACTTCGCGGCTGACTTGGAAGCCTCGCGG 2509971 31 100.0 34 ............................... ATAAGCTGAAATGGAACGGCTATGTAGTCGCCTT 2510036 31 100.0 34 ............................... CCCCCATGAATGCCTCTATAATTGCCCCGGTACG 2510101 31 100.0 33 ............................... TATCAGGAGAGTAATTTCTCCAATACATTTCTG 2510165 31 100.0 34 ............................... CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 2510230 31 100.0 34 ............................... TCCACCACGCCGGAGTTTCTCTTGTACATGGAGA 2510295 31 100.0 34 ............................... CCCTGTTCACCAACGGCGAGATAGGTACGGTGCA 2510360 31 100.0 34 ............................... AATGTCGTAGCCGCAGGCGGTAGCATATCCTATG 2510425 31 100.0 35 ............................... GTTGTCATGGTTGTGGGTGCGATTATAGGACCGGG 2510491 31 100.0 34 ............................... CGGCTTTTTCCACCTTGTCCAGCACGGAGGGCAT 2510556 31 100.0 34 ............................... CATTCCGTCCTCCATTTTTGGAGGGGATGAATTG 2510621 31 100.0 34 ............................... CCGTTAAAATCCTGCGTGATTTTATGGCTATCAG 2510686 31 100.0 33 ............................... TCTTACGCTTCCACTTCTTTCCGTGAAAATTTT 2510750 31 100.0 35 ............................... AATGCAAGTCTTTATCTCTTCGGGCCGAACGTTGA 2510816 31 100.0 35 ............................... TCCCGTATAGATAGCTTGAACGACAATCGGAACAT 2510882 31 100.0 33 ............................... TGATAATAAAAAGTATAAATCAGGTTATGACGC 2510946 31 100.0 34 ............................... CAGGTCGGCGAATCCCAGCGGGCGGACCGCGTCA 2511011 31 100.0 34 ............................... TCCGGCTACCGACTGGGACCGGCTGCCGGAAACT 2511076 31 100.0 34 ............................... CCCGTCCAAACTGTACTGCGCTACTGGTCTAACT 2511141 31 100.0 33 ............................... TTTTGCCAAGAGGCAATCCCTGACCATGCGGGA 2511205 31 100.0 33 ............................... GCGTTCGCGGCTGTTGGTAGCCTGCCTGGACGT 2511269 31 100.0 34 ............................... TTTGCTTTTCGCCGTCGTCATCCAGTCCGTCAGC 2511334 31 100.0 34 ............................... GTGAGTGATCGCGTGTTTCGCTCGAATGATTCTA 2511399 31 100.0 33 ............................... TATTCGCTTTTGATTTTCATTTATGTATTTCCC 2511463 31 100.0 34 ............................... GCCCTGGTGGCATGAATAGCTTAAACACTATACA 2511528 31 100.0 34 ............................... CCTGCCCCCACAATCTGCATAACTTCCTCATGTT 2511593 31 100.0 34 ............................... GTTCTTCGCTCATAGCAAAAGTCTGATTTTTAAT 2511658 31 100.0 34 ............................... CGGATGAAGCGTTTGATGCAATCGGGGATGATGC 2511723 31 100.0 34 ............................... TATAATCATTAGCAATTAATCAAAAAAACAAAAG 2511788 31 100.0 33 ............................... TATGAGAAACGTTGAATTATGCGTGGTTGCATG 2511852 31 100.0 33 ............................... TGTTCGCACTAGCTGCGTGTGCCTCCTACATTA 2511916 31 100.0 35 ............................... TCTTCCCGGAAAACCCGTAACCTCAACTCTATCAG 2511982 31 100.0 35 ............................... ACGTTATTCATTGTTCGTCAAGTATTTGTAGGCCT 2512048 31 100.0 33 ............................... TGTTTCTTCGTAAATCAAGATATGCAGTTTACT 2512112 31 100.0 34 ............................... GTGTGCTCCCTGCTAAATTCTACCTTTGGATTGC 2512177 31 100.0 34 ............................... TTGCTTGTTTCACCGTAGTATTCTTCATACGGCC 2512242 31 100.0 34 ............................... CCGGTACTGTACAGGGGTGATAAAGGTCCACCTG 2512307 31 100.0 34 ............................... TATATAAAGATATTCTTCCACAAAGTGGTTGTTA 2512372 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 2512436 31 96.8 34 ...................A........... CCGTCGTCGTCCAGTCCGTCGGCCCTAAGTGGGG 2512501 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 2512566 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 2512631 31 83.9 0 ........C....G........G....C..G | G,C [2512656,2512659] ========== ====== ====== ====== =============================== ==================================== ================== 72 31 99.7 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2521665-2524104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029702.1 Akkermansia muciniphila strain EB-AMDK-41 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2521665 33 100.0 35 ................................. TCTTTGTTATCCACTATAGCTTATGTTTTGCTCCC 2521733 33 100.0 34 ................................. TATTTGTTTAGTTTAGTTTAGTTGTTGTACCTAT 2521800 33 100.0 35 ................................. TCTACCTCTTCCCGTTCGTAACCCGGGCAGGTGGA 2521868 33 100.0 34 ................................. TTTCAATACCTGTTCCATGTCGTACATTTTCAAT 2521935 33 100.0 34 ................................. CGTACCTAACATGAATAAGGGCAGGGGAATAACC 2522002 33 100.0 34 ................................. CGATAGGTACGACGGATAGCTCCTGGCGTAACGG 2522069 33 100.0 34 ................................. ACGTCCTGGCCGTTATTGCCATTGCCGTTGACAA 2522136 33 100.0 33 ................................. GGATTGAACTTAAACGCGATAGCATCCTTCGGA 2522202 33 100.0 34 ................................. CGCTTCATCCACGAATCCATGGCCCCGGCGATAC 2522269 33 100.0 33 ................................. CTCATACAACCCGGTAGCCTATCAGAGCGAACT 2522335 33 100.0 33 ................................. TCATCCTCCTGTGGGCCTACCGCGAACTGAACG 2522401 33 100.0 33 ................................. CGGTCGATGATTTCATTGACCCACACAGGCCCC 2522467 33 100.0 33 ................................. CATGTTTCGGGCAATGGACTTGGCCAAGGCACC 2522533 33 100.0 34 ................................. CATGAACCCGGTGCCTCCGGTTACGTCAACAGCA 2522600 33 100.0 34 ................................. ATGACCGGATAAGTTTAATTGTCGGAGCTTTGCT 2522667 33 100.0 34 ................................. ATTTTCAATCCCCACAGCATCACCTTGAGGTTGG 2522734 33 100.0 33 ................................. CCATGTCCTTGGTGGTCAGGGCCTGATACTCCG 2522800 33 100.0 34 ................................. CCCAGCGCGAAGTGCATTTAGAATCTTCTCCTGC 2522867 33 100.0 34 ................................. ACAAAAATGATGGAAAATAATATTGACAAGCCAG 2522934 33 100.0 33 ................................. CATAGCTCACCCCGGAGGTCGCGTCAACGGCTT 2523000 33 100.0 34 ................................. CCATGGTCAGCACCTTGTTGGTAATCTCATGCTG 2523067 33 100.0 34 ................................. CTATATTGTAACCACTAAGTGCAAGTTGGTAGAG 2523134 33 100.0 34 ................................. ACGTAACCGCGCCATTCTTCATGGCTGCGGGCTT 2523201 33 100.0 34 ................................. TTCTTTTTCCTTTGCATTGTAGTAAGTCGTTGAT 2523268 33 100.0 35 ................................. CCTAAAAATGGACATGTGGAGTCCACCCGCATTGT 2523336 33 100.0 34 ................................. CAAAAATATGGCAAGGTTCAGATTCCCCTTCGAG 2523403 33 100.0 34 ................................. CGCCTCAAAGCGGAGGGGGACGTCCCCGGTGGGT 2523470 33 100.0 34 ................................. ATAATTACCGTCCCCATCACATTTGACATTGAGC 2523537 33 100.0 35 ................................. TTCTTCCAATCCGGCTCTGGCCCGGTTCCAGCGTT 2523605 33 100.0 34 ................................. TGTGACTATTTGCTTATATATGAGATAGTCGGTT 2523672 33 100.0 34 ................................. TTTACGATGGATAATAGTGAGTATTGTGTATTAA 2523739 33 100.0 34 ................................. TCATGACACAAGGCAGTCACCTTAGGCTTTTCTG 2523806 33 100.0 34 ................................. CAATGAATCCGCACAGGCGGCGGCCTCCCGGAAG 2523873 33 100.0 33 ................................. ATCATGATGGATAGTAAGCAGGGCAAGAAAGCC 2523939 33 100.0 33 ................................. TGGATATAGGTTTCGTCGATGACATTGCAGGTC 2524005 33 100.0 34 ................................. CGTGAGGATCGCCAGCTTTTCGGCGTCGTTTTTG 2524072 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 37 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2923254-2919267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029702.1 Akkermansia muciniphila strain EB-AMDK-41 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2923253 31 100.0 35 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGCCA 2923187 31 100.0 33 ............................... TTGTGGAGCAGTTTGGAAATGGCTAAATGGAGT 2923123 31 100.0 34 ............................... GCAATTATTGCACTTTACCGCATCCCCACGGCCA 2923058 31 100.0 34 ............................... GCTAAAGCTCATACTAGTAACTTTATGGCCGTAG 2922993 31 100.0 34 ............................... GTGTCGATGACGGCGGCCTGCTCCGTCTTCTTCT 2922928 31 100.0 33 ............................... AGTGTATTCCATGGGTAAATTCCTTTACTGATT 2922864 31 100.0 34 ............................... TTCGTTCATTGTATATTATGGTTAGGTTTTATTT 2922799 31 100.0 34 ............................... CGCCTGATGCGGGACTACGGAAAATACAGCGCAG 2922734 31 100.0 34 ............................... CGCGGAATCCGGGGATGCCAGGAACCTGACGGAG 2922669 31 100.0 34 ............................... GTGTGGAGTTCATTGCCCCACATGGGGCGACTAA 2922604 31 100.0 34 ............................... CAATCGGTTTCCTATAACGTAGGCTACGCGGTCG 2922539 31 100.0 34 ............................... AAAGGCGGAGTAGGAGTCAACGTTGGCCAGCTCC 2922474 31 100.0 34 ............................... GGGCTCCTTGTCATATCCCTCTATGCAGGTGACG 2922409 31 100.0 33 ............................... GACAAGTCCCAGGTGAACCGAGCCCTTGCCATG 2922345 31 100.0 34 ............................... CGGGGGAACAATGATGACCGGAGAATCTTGTTGT 2922280 31 100.0 34 ............................... CCTACCTCAAGCTCTGGCAGTCCTCCAGCGAAGA 2922215 31 100.0 33 ............................... CGTGATATAGAAACTGCAACCGCGCCGGGTCAT 2922151 31 100.0 34 ............................... TAATACGGAATACCAGCACAAAATCTGCGTGAAG 2922086 31 100.0 34 ............................... GGAGACCAGCCACTGAATGAGGGCTGGGACAAGG 2922021 31 100.0 35 ............................... TTCAACGACTTGTCGGACGTGTTGCGAGAGTACAA 2921955 31 100.0 34 ............................... CTATTGTGGAATACAAACCAACGGGGGTTAGTAG 2921890 31 100.0 33 ............................... CCCTAACAGGAAGCCAGTCAGCCAGGATGATGA 2921826 31 100.0 33 ............................... CAAGGCATCAATTACGAGGTAGGCACTGGTCTG 2921762 31 100.0 34 ............................... TGTTTCAGGTCCACGTTGGAGTCATAGATGGTAT 2921697 31 100.0 34 ............................... TCATTTTCAGCTCGACGGGAACCAATATAGGATT 2921632 31 100.0 33 ............................... CTATATTGTAACCACTAAGTGCAAGTTGGTAGA 2921568 31 100.0 33 ............................... CGGGTAGGTGAAAAAGTCCCATGTCTTAGGTGC 2921504 31 100.0 33 ............................... TGTTCTTCGTAATATTGTGCAAGTCCGCTACCC 2921440 31 100.0 34 ............................... GTCGAACAGGGCAAGGTGCAAGTGTTCATCTACC 2921375 31 100.0 34 ............................... TCCATGCTGAATTCTACCTTCGGATTGCTGGAAA 2921310 31 100.0 34 ............................... CTTTGCTACTCCTGCGGGCAGGAACCCGGCAAGG 2921245 31 100.0 33 ............................... TATTGGGTTATAGTCAATCATTTTCTTAGTCAA 2921181 31 100.0 34 ............................... CGTTCGTGCTAACCATTGTAAAATCAATCAGTCT 2921116 31 100.0 34 ............................... CGTCCGCTTCCACGTCGGCTAAATGAAAGGCGTA 2921051 31 100.0 33 ............................... TGCAGCGATTGCCGCAGGGCGAGGTTGTTGGCC 2920987 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 2920921 31 100.0 35 ............................... TTTCACGCGCTTCTTCCGGCTTAATATCATAGCAG 2920855 31 100.0 34 ............................... TTCCTCCTGTTCCGTTTCTGCGGTTTCCGCCCCT 2920790 31 100.0 34 ............................... AACGTCCTGCTCAATATCAGAAAGGCACCCCTTG 2920725 31 100.0 35 ............................... AAATGACTAAATTAGTTTTTAACGCATCTGATTCT 2920659 31 100.0 33 ............................... ACCTCACCATCGGAAATAATCGTGTCGGTCAGG 2920595 31 100.0 33 ............................... CCTCCATCAGATCCTCCACCGTCGCGCTTCCGC 2920531 31 100.0 34 ............................... CAGGACCCGGACGGCAGGGATTACCTGTCCACAC 2920466 31 100.0 34 ............................... CCCCGCTTTAACCTTTTTACACAACCTGACAATG 2920401 31 100.0 36 ............................... CAGAAAAAATCACTCCATCCAGGGAGACGGCGTCCC 2920334 31 100.0 34 ............................... CCGGCGCCGCGAGCGGGAAAGGCGTCATTACGCC 2920269 31 100.0 34 ............................... TACGAAATCCTTCGCAATAATCCGGTCCGCAGGA 2920204 31 100.0 34 ............................... CGGACTGCGCAATAACAATCCTGTAGGTAGCGGA 2920139 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2920074 31 100.0 34 ............................... TTGGGAAAGCTGGAGAAGGGTTGGTGACGGTAAA 2920009 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2919944 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2919880 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 2919814 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2919749 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2919684 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2919620 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2919555 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2919491 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2919427 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2919362 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2919297 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 62 31 99.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACTCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //