Array 1 694397-696342 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHN01000019.1 Clostridium baratii strain 695-15 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 694397 29 100.0 36 ............................. AAAAAATAAAATAGGCTTATCATATTGTTTAGAAAC 694462 29 100.0 37 ............................. TTAGTTAAATACAACCTCTAGGACTTCCCCAAATCTA 694528 29 100.0 37 ............................. TTGTGTATCTTTATTAAGAACTCATTGTTATAATCCA 694594 29 100.0 38 ............................. GAAGTTTGTATAGTATCGAGAGAGGGGCTAAAGCCCCA 694661 29 100.0 37 ............................. TATCTTGTTGTACAAAAGAAGTTTTTTTCATTCTATA 694727 29 100.0 36 ............................. CAAAGATTATGCTAGAAAAATAGCAAAAGCTTCATT 694792 29 100.0 37 ............................. GTAAATACTACTATAACTACTCCTTTAGAACTTCCAA 694858 29 100.0 37 ............................. CATAATTCCATTCTAAAGTTGAACTTTGTACTTGCTT 694924 29 100.0 37 ............................. ATTAGTTTTCCTTTCTTAACTTTATCTTTAAATAGAT 694990 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 695056 29 100.0 38 ............................. TTCTCAATAGCGTTAAAACAATTTAAAGATTTTTATGA 695123 29 100.0 35 ............................. AAATTTAATATTGGGAGAATTTTATGATTAGAGTT 695187 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 695252 29 100.0 36 ............................. CTACGTTACGTTACTGTTCCAGTTGCTCTTTGTGAT 695317 29 100.0 38 ............................. AAAGGTATTAAATAATCATAAAAAAATTCCATAATAAA 695384 29 100.0 37 ............................. TAAGCTAAATCTGAGCTAATTGTATTACAAGAATCCG 695450 29 100.0 36 ............................. AGGATATTATTAGTCACACCAACAGGGAAAAGTAAG 695515 29 100.0 37 ............................. GATGAAAAAGTATTAGTTGGTGAAGGATTATTGAATA 695581 29 100.0 36 ............................. GAACTAAGACAGTATGGATTAGAATATGAGGAAATA 695646 29 100.0 37 ............................. TGACAATACTATAAAAGAAGTATTTAACAGAACTATT 695712 29 100.0 36 ............................. TGAAATAATACAATTTAATCTAGTTCTTATCGCTTT 695777 29 100.0 37 ............................. TATGAAGAGTTTTATAAATGGGCTAATGAAATGGCTA 695843 29 100.0 185 ............................. GAACCTACACTAGTACCAACAGAATATCGTAACTAAGAATAATATAAGTTAACATAATATCCATATTCTTATTTAGATTAGTTATGTTTTATATTAATTATATTTAAAAAACTTTTATGTGAAGGTTTATTATAAAAATTATTGGAAAGAATTATTTGATGACTAATTTTTTATGATTTATAATA 696057 29 89.7 28 A......C.........A........... TATATAAAATATAAAATAATAGAAAAAA Deletion [696114] 696114 29 82.8 169 .......C........AA.....T....G TGCTGAAAATAATATTTCAGCACTTTATTTTTTATTACAAGTATTTCAAGTAAATTATAAGAAAATGTAATATATATTATTATAAAACTAAAAATAAACAATAATAAACAAATTTTAGGCTTATTTTGAATTTTTAAATTATAATAATTTGAAATATAATAAATTTATT T [696136] 696313 28 79.3 0 A.........T.A...AA..-........ | A,T [696336,696340] ========== ====== ====== ====== ============================= ========================================================================================================================================================================================= ================== 26 29 98.1 48 GTTTTATATTAACTATGTGGAATGTAAAT # Left flank : AAGAATATAGACCTTTAAAGGCGTGGTGGTAAAATGTTTGTTATAATTACTTATGATATAAAAATTCAGAGAATAAATAGAGTTAGAAAATTATTAAGAATGTATTTAACGTGGACTCAAAATTCCGTTTTTGAAGGAAAGATAACAGAGTCTAAGCTTCAAAAATGTTTAAACGAAGTTAATAGCCTTATCGATAGAAAAGAAGATTCTATTTATGTATATAGAGTTCAAAATGAAAAAAATATAAAGAAAGACGTTATTGGAGAAGAAAAGAATTTTGATGAATTATTTATTTGATAGTATAATAAAAATATGAGATTTGCAGTAAACCGTAAAAATGATTAGATTGAGCAGAAGCCTTTAAAAATCAAGGATAGAGGTATGTTGTATACAAATTAAAAAAATAAGACTGAAGGTTTACTGCATTTGCTGGGATTATTTTTAGAAAAAATAGTCTATAAATGGCTTAAAATGGTCAAAAAGAGCTTATTAATTTTGGG # Right flank : TGTATGATATCTAATGAAAAGAAAAATAAGATAATAGAAAGGTTTAAAAATAATGATGATAAAAATATGTCTAAAATTGCTAGGAGACTTAATGTTTCCAGAACTTTTGTTTAGAAGTTATTAAAAGAAAATGGATTGATATAATATCTTGAATAGGTTTAAGTATTAATTTGAAAATTAACTCAATGTTTAATAAAAGTTTATTGAAAGAATAAATTTAAATTCATAATGATGAACTTTTATTATTATGAATTTAAATTTTGCAAAAATATTTTTATTTTAAAATTATTTATTAAATTTTTGGTTTTAAAATATATTTTACTCAAATAATTATAAAAAAATAATTATGGACAAAATAGGTCACTAATTGAAGGTAAAATATAATCATAAAATAAATTGACAAAATTTAATTATAGAGTATAGGAGGTGCAGGATGAAAATTTCTATTACAGGAAAAATGAAAGAAAAACAAATTCCAATTGGATATAGAATGTTTGTAT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.59, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 703295-703649 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJHN01000019.1 Clostridium baratii strain 695-15 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 703295 29 100.0 36 ............................. TAGCAAGAGCAGTTCCTCCAAGTTCACCAGCCATTG 703360 29 100.0 36 ............................. ATAGTAGATATAACCCCAGGTTTTCTGCTAGATTAT 703425 29 100.0 36 ............................. CACATAGATACACTTTATTATACTGTCTCGCTTGAA 703490 29 100.0 36 ............................. GTTGATGACTTGCAAGGAGATCCGTGTTTCTTTATG 703555 29 100.0 37 ............................. TTTAAAGATGGAGGTCTTAAAGATAAGCAAGTAAGAA 703621 29 79.3 0 .T.....T...........TGCG...... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.5 36 GCTTTATCTTAACTATGAGGAATGTAAAT # Left flank : TGAGTGTATAGATAAATTAAAAGATATAAACATAATAAAACTAGAAAAAATCAAAATACGAGATACACTTAAAAGTTTTACAGTATCAGTAGGAAAATATGACTTAGAGGTTTTAGGAAAATCAGCATTATATAAAGAAATAGAAATAAGTGAATATGAGAAAATTCCAGTTATAAAATGTGAATATGGAGAATTAGGGTTTATAAGAAGCAAAGTTGAAGATAATAATATATATGATAATTTTTTATAATAAAATTAAGTTTAAGTATTTAGTAGATTAAATGATAAATTAATGATAATATTATAATAATATATTAATTTGCAGTCAATCTAAAAATAATAAGAAGCTAGCTAAAGCTAGTAAAATCAATAAGTGAGCAACACATTTGCTTGGTAGTGAAATTTAATACTAACGGTTTACTGCAAAAGAGATTAGAATAAATGAAAAATGATACTTACAAATGGCTTGAAATGGTGACAAATACTTGTCTATTTTTGGG # Right flank : TTTAAGATGATGTTGATTCTAAATCAGTCACGCTCAAAATTAACTTAATTATATTAATGTTGATAAATTATAGTATTAGAAGATAGGGAAGTAGCTATAAAATAGCACTTCCTTTTTCTATATGCTAAAATATGTATATAAAAAAGAAAAGGAGAAAATCCATGAGTTGTATATTTTGTGAGTACAGTAAAGAAGAATATATAGCAGAAAATGATTTATGTTTTGCTATTTTTGATAAATTCCCTGTTAATGAAGGACATGCTCTTATTATTCCTAAGAGACATTTCCAAAATTACTTTGATGCAACAAAAGAAGAGATTGCAGCAATGTATGATTTATCACAAGAAGTTAAACAATTAATTGATAATAAATACAGTCCAGACGGATACAATATTGGAGTTAATGTTAACCATGAAGGAGGTCAAACTATTATGCACCTTCATATGCACATTATTCCAAGATATAAAGGTGATATAGAAGATCCTAGAGGTGGTATTAGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTATCTTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //