Array 1 246155-248368 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDE01000003.1 Pasteurella multocida subsp. multocida strain ATCC 2095 ZB100002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 246155 36 100.0 30 .................................... TAGAATTATTAAAATAAGCAATTAACAACG 246221 36 100.0 30 .................................... GATAATCATCGTTGGGAAACGCCCGTCTTT 246287 36 100.0 30 .................................... AGGTTTGGCGGCGTATCGTAATGACGATCA 246353 36 100.0 30 .................................... AAGTTAAACAGGTTAGTGAGCCATTCTTTA 246419 36 100.0 30 .................................... AACACAAAGAAGGAAAACAACATGAAAAAA 246485 36 100.0 30 .................................... GTATAATCTGTTCATTGTGCGTCTTTGCTA 246551 36 100.0 30 .................................... TTGAACAAGTAGTAGAGTTCATCAACGAAC 246617 36 100.0 30 .................................... GTACGCTAAGTTTCCTTTAGACAGCTTATG 246683 36 100.0 30 .................................... AATATCCGTGAATTTGTACAAAAAGAATAT 246749 36 100.0 30 .................................... ATATTATTTTGCGTACTTTTGAGGGTTTTA 246815 36 100.0 30 .................................... ACATAACCAACAGCATAATCAACACAACTT 246881 36 100.0 30 .................................... TGATGACCAATTGGAAGGTCTTGTTGGTAT 246947 36 100.0 30 .................................... TTATCATGGATTAATTGGGCTTTACGTCCT 247013 36 100.0 30 .................................... CAACAGAGCTTGCAAGTATCGCTGCAAAAC 247079 36 100.0 30 .................................... TCTTCGTTTCTTCAACGTTCACCACTGGTT 247145 36 100.0 30 .................................... CATCGCACAAGTGGGGGCTTCGGCTTGGTG 247211 36 100.0 30 .................................... TAATTGAGCGTTCAATATGAGCAGGTTGTA 247277 36 100.0 30 .................................... ACATAACCAACAGCATAATCAACACAACTT 247343 36 100.0 30 .................................... TGATGACCAATTGGAAGGTCTTGTTGGTAT 247409 36 100.0 30 .................................... TTATCATGGATTAATTGGGCTTTACGTCCT 247475 36 100.0 30 .................................... CAACAGAGCTTGCAAGTATCGCTGCAAAAC 247541 36 100.0 30 .................................... TCTTCGTTTCTTCAACGTTCACCACTGGTT 247607 36 100.0 30 .................................... CATCGCACAAGTGGGGGCTTCGGCTTGGTG 247673 36 100.0 30 .................................... TCCTTTTAGTAAATATAGTTATCTTTTGAG 247739 36 100.0 30 .................................... ACACCAATTGCAATCAAAGCACCTAACATA 247805 36 100.0 30 .................................... TATCTGACGGTTCTCGCCAGTGGCGGCAAA 247871 36 100.0 30 .................................... TTGCGCTATTGTTTCAAGCTCAATTTTGTT 247937 36 100.0 30 .................................... TCAGCTTTTCCCACTGTGGTGTATGGTGCG 248003 36 100.0 30 .................................... AAATTTATTTACGCACAACAAATTCATCTA 248069 36 100.0 30 .................................... ATGCAAAACCTGCATAGTACGTCAAAGGTG 248135 36 100.0 30 .................................... TCACAAGCACAACTCTTTCTATGATATACT 248201 36 100.0 30 .................................... AAATCAATAGAATTATCTATTGATTTAGAT 248267 36 100.0 30 .................................... CTTAAATCATTTAACTTTGAATAATCACTT 248333 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : TAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAGACATGGCGTTGATATGGAGGGAAATATCTATGGTACAACAAGTAGTGAGGAAGAATAAAAAATTATCAACATACTGAACCCAAAAAACATGAAAATTAGAGAATAAATGATTTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : TTGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAGAATATAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 99059-103766 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDE01000001.1 Pasteurella multocida subsp. multocida strain ATCC 2095 ZB100000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 99059 28 100.0 32 ............................ TTTCCGCTCTTCATCATCAAACCACTTAATCT 99119 28 100.0 32 ............................ AGTTTATTTGCCGTAGCTGACAATATTTATAA 99179 28 100.0 32 ............................ TTTTTCTGATAAATTAACTTCTCACCAAAATC 99239 28 100.0 32 ............................ AAAAGCCAAAGAGAGAGCGTGGCAGAAAATGA 99299 28 100.0 32 ............................ TTTTGGTGCGGGGCATAACTGGGTGAAAAAAC 99359 28 100.0 32 ............................ ATGATTCTATGCGTTAATCCAAACGCCGCCAG 99419 28 100.0 32 ............................ ATAAACACATGATCACTTCTTGACGAGTCAAA 99479 28 100.0 32 ............................ ATGAGCTTGTCAAGACTAAAGCTCTCTTTATC 99539 28 100.0 32 ............................ TTCGGTGCAGTTGAATTCTTAAAAGAAATCAG 99599 28 100.0 32 ............................ TGTTAAAACTGGATTTCACCCGTCCATGTTTG 99659 28 100.0 32 ............................ ATTTATTTTATTTTGAGCAAGACCACCAAGGA 99719 28 100.0 32 ............................ TTGCGCTTGAACAGATGAATTAATGACATCAC 99779 28 100.0 32 ............................ AACATATCACACCATGAAACTTTCCATTTTGA 99839 28 100.0 32 ............................ GAATGCAAAAATTAACATTGCTGGCATCGAGG 99899 28 100.0 32 ............................ TTCGCTTGCCCCGTAGCCGTATTTCCCAATCC 99959 28 100.0 32 ............................ ACCTGAGAAAGCCATTGCGTTTTTACAGGAAA 100019 28 100.0 32 ............................ TACGGCATCCATCATATCGACCAACAAGTCTT 100079 28 100.0 32 ............................ TGGAATTGATGAGTTTAATCTTAAATCTGCTT 100139 28 100.0 32 ............................ AAGAATGCTTTTGCAAAAATGGTTGGAGTTAG 100199 28 100.0 32 ............................ TTTTAAATTTTAAAAAATGCCTCTTTCGAGGC 100259 28 100.0 32 ............................ ATCGTCCGTAGTTACAATTAACAAAGCTGTGA 100319 28 100.0 32 ............................ GTGCTGCGCATTTTGGTGTGGTAACTTGGCGA 100379 28 100.0 32 ............................ ATGTTTGCGCGGCTATGCAAGATCCCGCCGTG 100439 28 100.0 32 ............................ ATAATCTCTGCGTTGAATACGTGTTCCGATTG 100499 28 100.0 32 ............................ GTAGATATCCCGTTCAACAAGACTCAAGTACG 100559 28 100.0 32 ............................ ACTTCTACAAAATCAAATGGCTTTCCGCTTTT 100619 28 100.0 32 ............................ GATAATTGCCGTGTTCATTTCACTAGTTTTTG 100679 28 100.0 32 ............................ AGAAGTTATTCAAAAAGGTGAGCAATATATTA 100739 28 100.0 32 ............................ GAGTTGCAGGTTATTGCGCAAACCAAGTAACC 100799 28 100.0 32 ............................ GCAATTAAAAAATCACTATCAATATCATAAGA 100859 28 100.0 32 ............................ TTAAAACTAATCTACCGCTTGAACTCGAATAT 100919 28 100.0 32 ............................ AACAATAAGTAGCGAACTGCTTAACTTGAGGT 100979 28 100.0 32 ............................ AACGGCAACAAAATCAAAACGGTGCAGTTAAA 101039 28 100.0 32 ............................ ACTTTGTAGAATTATCGACGTTGAGCAACATC 101099 28 100.0 32 ............................ AAGAACGTTGGGTAACTCCACCAATTTGCTTG 101159 28 100.0 32 ............................ TTTTTGAAACTCATATCATCCGCACTTTATCT 101219 28 100.0 32 ............................ AGCCAACGCTTTTTCCAAGTCAAATTTTTTCA 101279 28 100.0 32 ............................ TCAAAAAAAAGCCCTCTTTCGAGGGCGGAGTG 101339 28 100.0 32 ............................ ACCAAAGAACGTGCAGCGGTGGAAGAATCAGA 101399 28 100.0 32 ............................ AAGCTTGGCTTGATGCTATGAAAAACTCGCGG 101459 28 100.0 32 ............................ GCAAGCGGCACACTTGAGATGGACCCGTATTT 101519 28 100.0 32 ............................ AATTGGAGGGGATTCATTTAATTGGGCTGTAA 101579 28 100.0 32 ............................ TCAGTGTAGCATTCTTCACTTGGTTTTACAGG 101639 28 100.0 32 ............................ TAACCTGTCTTCAAATTGTAAGTACATATTGT 101699 28 100.0 32 ............................ ATTCGTAGTACTGCCACAGGAGTTCGAGTAAC 101759 28 100.0 32 ............................ TTTATGGGTTGACATAAGAAAAATAGACTCAT 101819 28 100.0 32 ............................ TCGTAGTTAGTTGTTGTTAATCTTTATGATAA 101879 28 100.0 32 ............................ GTCAACCTTTCTTCAAAGAGTACAAACTCAAG 101939 28 100.0 32 ............................ TAACTTGTCTTCAAATTGTAAGTACATATTGT 101999 28 100.0 32 ............................ ATTCGGAGTTCCAGTGGAATACCGTTTTTGTC 102059 28 100.0 32 ............................ TATGGTTATTCCTCCAAGAGCATGGACGGGGA 102119 28 100.0 32 ............................ ACCACGGCGTCGCCCATAAATCCTTATCTTTT 102179 28 100.0 32 ............................ TAATTCAGCCATATCACCAAGATTGGGAATAT 102239 28 100.0 32 ............................ ACTTTGGTTTTCTGAAATTGAGCCATTCCCAA 102299 28 100.0 32 ............................ TAAAATGCACGCAATTGTAGTTAAGCGTTTCG 102359 28 100.0 32 ............................ CCAAACGCTTTGAGATTTCAATAAATGTCGCC 102419 28 100.0 32 ............................ TTACAGCAAAAGGGGAAATTAGCTTAAAAATC 102479 28 100.0 32 ............................ ACTTCGGTTTCATTTGTTTTCGCAGAAAGCAC 102539 28 100.0 32 ............................ TGATTTTGAGCGCGACGACTATTGGTGGGAGG 102599 28 100.0 32 ............................ GGGCTCATCGGTATTAATCTCGGTGCAAGCGG 102659 28 100.0 32 ............................ TTTTTTGTTATATAGATATGCTACAAATGACC 102719 28 100.0 32 ............................ TATGAGCATTTACGTGACTTATTTACGCTTGA 102779 28 100.0 32 ............................ CGAAAAACTACGTCATCCAAAAGCCATTTTAT 102839 28 100.0 32 ............................ ATTACCAATGTTAAAGGGTTAACTGTGCTCGA 102899 28 100.0 33 ............................ CGTTTCCGTCAGATAGATAAGATTTAGTTGCTT 102960 28 100.0 32 ............................ TAGCACCGCGAATTGCTCCGAAATACCGATTT 103020 28 100.0 32 ............................ ATGAGGATTTCCATGCGTCCTTGAATACCGCC 103080 28 100.0 32 ............................ ATGTTCATTAACAACAATATCTACTGCCTCTT 103140 28 100.0 32 ............................ AGAATAAACATTAACTCGATAACGTTTACCAA 103200 28 100.0 32 ............................ CGCAGACAGCAACATGCGGTGATGTGAATCTG 103260 28 100.0 32 ............................ ATCACGGCGATGAGAAACAAGCTTAAAAGAAG 103320 28 100.0 32 ............................ AAGTATTCCTGCTGCACTTCTTGCGCACTTAG 103380 28 100.0 32 ............................ AGCTCAATACATGCGTGCACCAAAGCCACAAT 103440 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGCT 103500 28 100.0 32 ............................ CGAGTAAGTGTGAATCCACGCCATTTATTTTT 103560 28 100.0 32 ............................ ACATTTGGTCCAAGGTGGTGATAATTCTTGGC 103620 28 96.4 32 ............G............... TCCAGAGTGTTACAAAACGGCGGAACAGTTAT 103680 28 100.0 32 ............................ AGATGACTTATGTGTCTGATCGCTCCGAAGAA 103740 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 79 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGGCGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAATGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTTGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAGGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 177198-173747 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDE01000004.1 Pasteurella multocida subsp. multocida strain ATCC 2095 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 177197 28 100.0 32 ............................ ACGTTATTCAACCCGTCGGTTATTCTGTGAAA 177137 28 100.0 32 ............................ ATATATGCTTGACCCACAGCTTGTTGATGATA 177077 28 100.0 32 ............................ TGCGGGTTCTTGTCCTGCTTTTACTGTTCCTA 177017 28 100.0 32 ............................ AGTCGTGGAGCTTATTGCGCTGTTCTGGACTT 176957 28 100.0 32 ............................ GCCACGGATTCGACGTGGCGCGCTGAAGACAA 176897 28 100.0 32 ............................ CATTTTGGAACACATTTTATCCGCCTAACGGC 176837 28 100.0 32 ............................ ACAAAATCAACAACGGGACTAGCAACCACGCT 176777 28 100.0 32 ............................ ACAGCAAAAAACTTATTATCTTTTTCAAACAT 176717 28 100.0 32 ............................ TGTTCAGAAATGAACGGGGTTTTTTATTACTT 176657 28 100.0 32 ............................ AATTGCTTACTAGCTACAATTGAGGTGGGTTA 176597 28 100.0 32 ............................ TCATAGTTAGTTTATGTTAATCTTTATGATAA 176537 28 100.0 32 ............................ TTTGAGCGCGTCTTCAATTGTGATTACATAGC 176477 28 100.0 32 ............................ TTATTGATTAAGTAGTCTGTGATTGCGACACA 176417 28 100.0 32 ............................ CGTGCGTTGTAGTGCGGCTTTCTTTTAAACAA 176357 28 100.0 33 ............................ GCACATTTCTTTAATCTCACGGTTATTAAGTGA 176296 28 100.0 32 ............................ ATTTTTTATTTCACTTGATGATTATCTTTCAA 176236 28 100.0 32 ............................ TTTTAGATACACAACTAGTAGACAAACAGGTC 176176 28 100.0 32 ............................ ATATTAATTTCCTCATGTTGTTAACCTTTATG 176116 28 100.0 32 ............................ ACAAGAGTTCGAGTAACTCCTCTTGTAGCTCA 176056 28 100.0 32 ............................ TTTTTGAGTTTGTGCAAATCTTCTCGCAAATC 175996 28 100.0 32 ............................ TCTTGTAGCTCATGCAAATACTCACCGCCTCT 175936 28 100.0 32 ............................ ATAGGCTTTTGCGAGATAATTTCTTTAATGAC 175876 28 100.0 32 ............................ CGCGGAATATCGTTCTCTTTCTGAGTTAAGTA 175816 28 100.0 32 ............................ TTTCAATTTCTTCATCAGTGTAACGTCGCGTT 175756 28 100.0 32 ............................ GTCACCCCTGAAGAGTTTTCTCAATTATCCAT 175696 28 100.0 32 ............................ GTCATCCACAACATAATCATCCAGCTTATGCG 175636 28 100.0 32 ............................ AATAAAATCCCCACTTTTGAAAAATCTCAAAA 175576 28 100.0 32 ............................ GCTACAAGAGATTATTGCTGAATCTATTAATT 175516 28 100.0 33 ............................ CTGAATTAGCGGGCGGTTATCATTTGCCCCGCT 175455 28 100.0 32 ............................ ATACTATTTCCTATTGCTTTATATCGTGGTGA 175395 28 100.0 32 ............................ TATTAGTAATACTTTCTCTTTACCTCTAAATC 175335 28 100.0 32 ............................ TGAAAAAAGCCACTGATTCAGTAAATGCTCTT 175275 28 100.0 32 ............................ ATGCAACGTATGACAGGTAAATTAGTAAGTAT 175215 28 100.0 32 ............................ AAAGTGGGTGATCATATTTTGCTATTTTGACC 175155 28 100.0 32 ............................ ATGTTGCTCAACTCGAACAAGCAGCACTACAT 175095 28 100.0 32 ............................ ATGGACCGGTGAGATCTTCCGGTCGGTCTTCG 175035 28 100.0 32 ............................ ATCAAAAGAAACACTCATACTCATGTACGGAG 174975 28 96.4 32 C........................... ATCAACGGACACAAGTTAGACGACGCTGTTTA 174915 28 100.0 32 ............................ ACCGTATATTTTCTTCCAGAATTTACCATTCC 174855 28 100.0 32 ............................ AATACCCGCAGCGGTTGCAGTTGTAGAAACAA 174795 28 100.0 32 ............................ GACATTGAATGTGATTGACGTTAGGGCCTCAA 174735 28 100.0 32 ............................ TCAATAAAAGGTGAAGAAAAAACATAATTAAT 174675 28 100.0 32 ............................ AAGATATGTTGACAATGGCAACACATTTTTAT 174615 28 100.0 32 ............................ ATTGTTGGAAAGTACCATTTCTTGGCAATCTT 174555 28 100.0 33 ............................ ATTTTGTGCGATGTTGACAGCTTGATAAACTAA 174494 28 100.0 32 ............................ ACAAGCGGATGAAAGAGTACTTGTATATTTCA 174434 28 100.0 32 ............................ GCATTAATAACGGAACACCACAAGCAAGAGCA 174374 28 100.0 32 ............................ AAGTCCGTTAAAAAGTCTGCTTCCGGATTATA 174314 28 100.0 32 ............................ AGTGTCACAAGAGTTCACTTTAAAGAAAGGAA 174254 28 100.0 32 ............................ GTGTTGCCACTTGGCTCGGCAGACGGCAAGTT 174194 28 100.0 32 ............................ AAATGCGGCGGGTCAAAAATGACTAGTTTGAA 174134 28 100.0 32 ............................ ACATTTTGAGCTAGTCCCGCTTAACCCTCTCT 174074 28 100.0 32 ............................ AATAATCCCACAGCGTGAGAGTGTGCGGTTTT 174014 28 100.0 32 ............................ ACAGTTAGTGCTTGATGAAATCACCGCAAACG 173954 28 100.0 32 ............................ GATGCACAAAGTGCGGTGAAAAACATTTATGA 173894 28 100.0 32 ............................ ATTTCAAACCTTTGAGCGTGAAAGCAGTTGGC 173834 28 100.0 32 ............................ AAAAAACCTTTCGATTAAAGAGGCGAGTGCGT 173774 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 58 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAACGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATACATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //