Array 1 288421-289349 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906458.1 Pasteurella multocida strain NCTC10322 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 288421 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 288481 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 288542 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 288602 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 288662 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 288722 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 288782 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 288842 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 288902 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 288962 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 289022 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 289082 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 289142 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 289202 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 289262 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 289322 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1550744-1549697 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906458.1 Pasteurella multocida strain NCTC10322 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1550743 28 100.0 32 ............................ AAAAGTGTTTATTGTGTGTAGAATATAACCAA 1550683 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGTCATAATGGCGTA 1550623 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 1550563 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 1550503 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 1550443 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 1550383 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 1550323 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 1550263 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 1550203 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 1550143 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 1550083 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 1550023 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 1549963 28 100.0 32 ............................ AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1549903 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1549843 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1549783 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1549723 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //