Array 1 118700-119396 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTE01000001.1 Streptococcus agalactiae strain ILRI032 ILRI032_20150704_2355_normalized40-5_run3only_c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 118700 32 100.0 33 ................................ AGCTTGGTAGCCTCATTGATAGCTTGTATTGTT 118765 32 100.0 35 ................................ AACAACACCATTTTAACTTGCGTTGTGTTAATTAT 118832 32 100.0 34 ................................ AGTATTCCAAGTCAATGTTTTATGTAGCAATAAT 118898 32 100.0 35 ................................ AAAAAAGGACTCATGAGACGTTTACGTTTAGCTGC 118965 32 100.0 34 ................................ ATCAACTACTGCTACTGCTTCGTGCCCCTCTTTC 119031 32 100.0 35 ................................ TTAGCAGAATAAAAACTTTCACTGTAAGGGGATTG 119098 32 100.0 34 ................................ AAAAAAGATTCAAAGCCACTACTACTTACTTTCG 119164 32 96.9 36 .....C.......................... ATAAATTGCATTTTTGCTAGCTAAATGAGTCACAAC 119232 32 96.9 35 .....C.......................... TGGAATGGTGCTGAATGGATTATCAATTCTTTTAG 119301 32 93.8 33 .....C..............A........... TAATAATGATTATCTTTTTATTAATTCATTATC 119366 31 78.1 0 A....-.............T..A.T..T..C. | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 96.9 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTGATTTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCACAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACATTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCCCCCTTTGCGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22972-22407 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTE01000007.1 Streptococcus agalactiae strain ILRI032 ILRI032_20150704_2355_normalized40-5_run3only_c7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 22971 36 100.0 30 .................................... TTTACCGTAGCACCAAACTATCAAGGAATT 22905 36 100.0 30 .................................... AAAATTTCATAAATAACATCTCTCGTTAAT 22839 36 100.0 30 .................................... ATGAAGAGATGGCGAAAAGAGGTTTCTGGA 22773 36 100.0 30 .................................... TTGAGTTTTCAGTTTATAAAAAAACACTGT 22707 36 100.0 30 .................................... AGCAATAATGTTTACAAAACCACTAATATA 22641 36 100.0 31 .................................... CTCGCCTTTTTTGAATTGTTTAAACATAGTG 22574 36 100.0 30 .................................... CAAACAACAACATGATACATCACTTGCTCA 22508 36 100.0 30 .................................... ATTTAGTGCTAAGCGTTCAACTGGCTTACT 22442 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAATAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTGAATTGTAGAATAGATGTCTACTGGCTTGTTTTAGAGCTGCGCGGTTATTATGCTAGGGCATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGCAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTATGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGCAGTGAAGAATCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //