Array 1 75247-74252 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQNP01000010.1 Corynebacterium bovis strain 16-3465 10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 75246 29 100.0 32 ............................. ATCTGGGACGTCGCCGCCCGCAGATCATTCGT 75185 29 100.0 32 ............................. ATGGTCGGCCAGGTGTGCGGTCTTCTGCATAG 75124 29 96.6 32 ............C................ GCGGCGGGGGCGATTGGAGCGAGGTAGTGGGA 75063 29 93.1 32 ............C...............T CGAGGGCAGCGTTCGAGTCGATGTCGCCCCTG 75002 29 100.0 32 ............................. CGACTCCGGCCACGCCACACGAGCACTGTCGA 74941 29 96.6 32 ............................T CGGCACCGACGCCTGTGACAGCTGGAGAGCGT 74880 29 96.6 32 .....T....................... GAGGCGTGCTTCGTGTCGTTCAGGGCGGCGGG 74819 29 96.6 33 ............................T CACCCGCGGAGTCACGTTCCTCCCCCCCACTGG 74757 29 100.0 32 ............................. TCGGCGAGCTGCTGTGCACGGTCGGTGGGGGA 74696 29 93.1 32 .C..........................G TTCCCGTCGCCGCCGTAGCCAGTGGTGAACAG 74635 29 89.7 33 A......G....................T CGACGAGAAGACATGGTACGGACACCCCATACC 74573 29 100.0 32 ............................. CCGTCACCCCAGCACGCCAACAGCACCGCCGC 74512 29 93.1 32 ................T...........G CCCCAGAACTCCCACTCGTTGTGGGTGAACGC 74451 28 79.3 82 ...........CC.G.......C..-..T GTGGGGAGCACCCGCGGGGATGACCCCGGGCCGCGCCGCTCCTGGCTGGAAGGGAGGACGACCCGCTAGACTGCAGACACTG 74341 29 93.1 32 ............C...............G CGTCACGCTTGGACGACTTTGATCCGGCATGT 74280 28 93.1 0 ...........-................A | C [74266] ========== ====== ====== ====== ============================= ================================================================================== ================== 16 29 95.1 36 GTGCTCCCCGCGTGAGCGGGGATGATCCC # Left flank : GCACCCGAGGACGGGGCCGACCAGGTTCCCGGCGGCCCTTCGCGACGGGAGTCCCCGTGATCACCGTGGTGTTGACGTCTCCTCCGGAACGGGTGCGTGGTCACCTCACGCGCTGGCTCTCAGAAGTGGCGACAGGAGTGTATGTCGGCTAGGTGAGTGCCCGCGTGCGGGATGAGTTGTGGCAGATGATCCAGGTGAACATGGACGGCGGTCGGGCGGTGATGACATACCCGACCACCACCTGTGAGCAGGGGTATGCCGTGAAGGTTCACAAACCGCAGTGGGAACCGGTTGATGTCGAGGGGCTGGTCCTGTTTCGTCGGCCGGGCGGTGACCGGACATCGCGGACCCGCGGCGAGTGGTCACGGGCCTCGCGGGAGCGTGGAGGCAGGACCAGGCGAGCGGATGGCCCGCACTGATGGCAGGTACAGACGTGAAAGGGCTGATCGACATCGAATGAAATCTGGCTTCTCGTGTACTACCATCCCTGGTCAGGAAGT # Right flank : CCCCCCCACCACCACCGCCCACCCACCTCCCGTCGTGTTCGCCCGTCCGCCGACCGCAGGTCTAAGGTGAATCCGTGGCCACGCGAACGACGACGAACAATGCCGCGCCCGGGTCAACCCGGCGCCGGCGGGGCTGGCGAGCGTTCCTCACGCCGGGCTGGGTCATCACCGCCGTCATCGTGGTGATGTTCGCCTACGTGGCGTTCACCGTCCTCGCACCGTGGCAGCTGGGGAAGAACACCCGCACGCAGGAGAACAACCAGCGTCTCTCCGCCGCGATGGACGCCGACCCGGTGCCGGTCGAGGACGTCCTCCCCGCGGACGGCTCACCCGCCGGCGCGGACCGCGAGTGGACCCGCGTGACCCTCCAGGGTCGCTTCATCCCGGACGCCCAGGTGCTCCTGCGCAACCGCCCGGTGGACACGAGCCCCGCGTTCCAGGTCCTCACCGCGTTCCGCCTGGACTCGGGCGGCACGGTCCTCGTCAACCGGGGCTGGACG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //